Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19278 | 5' | -61.7 | NC_004685.1 | + | 65363 | 1.11 | 0.00025 |
Target: 5'- uCAACCCUGCGGCUCGCGGAGAGGCCCg -3' miRNA: 3'- -GUUGGGACGCCGAGCGCCUCUCCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 66565 | 0.76 | 0.091554 |
Target: 5'- gCGGCCCUGCGGaa-GCGGuu-GGCCCu -3' miRNA: 3'- -GUUGGGACGCCgagCGCCucuCCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 25698 | 0.74 | 0.14368 |
Target: 5'- gUAGCCCaGCGGCaggucuuugCGCGGGGuGGGCCa -3' miRNA: 3'- -GUUGGGaCGCCGa--------GCGCCUC-UCCGGg -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 32901 | 0.73 | 0.151356 |
Target: 5'- cCAGCCCUGCGGCUCGgGccgccagucGAaGGGCgCg -3' miRNA: 3'- -GUUGGGACGCCGAGCgC---------CUcUCCGgG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 45246 | 0.72 | 0.181225 |
Target: 5'- gCGACCaguUGCGGgUCGgGGGGuuGCCCg -3' miRNA: 3'- -GUUGGg--ACGCCgAGCgCCUCucCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 40722 | 0.72 | 0.190673 |
Target: 5'- aCGACCCgaaGgGGC-CGUgGGAGGGGCCg -3' miRNA: 3'- -GUUGGGa--CgCCGaGCG-CCUCUCCGGg -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 60409 | 0.72 | 0.190673 |
Target: 5'- uGGCCCUGCaGCUguugacgcaucaCGCGGGGuuucggcGGCCCc -3' miRNA: 3'- gUUGGGACGcCGA------------GCGCCUCu------CCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 26853 | 0.71 | 0.205654 |
Target: 5'- -cGCCC-GCGGUggggaGUGGAgcGAGGCCCa -3' miRNA: 3'- guUGGGaCGCCGag---CGCCU--CUCCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 19229 | 0.7 | 0.238679 |
Target: 5'- ---gCCUGCGGUUCGCGccGAGucuGCCCa -3' miRNA: 3'- guugGGACGCCGAGCGCcuCUC---CGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 37855 | 0.7 | 0.244596 |
Target: 5'- aUAGCCCUGCGGCa-GCGGGaucGAcGCCg -3' miRNA: 3'- -GUUGGGACGCCGagCGCCU---CUcCGGg -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 3171 | 0.7 | 0.250635 |
Target: 5'- cCAGCgCUGUGGCcgccaaggCGCGG-GAGGCgCg -3' miRNA: 3'- -GUUGgGACGCCGa-------GCGCCuCUCCGgG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 64335 | 0.7 | 0.263081 |
Target: 5'- gCAACCCU-CGGCUCGUGGAcgcugacguuGAuGCUCg -3' miRNA: 3'- -GUUGGGAcGCCGAGCGCCU----------CUcCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 44013 | 0.7 | 0.276024 |
Target: 5'- aAACCCU-CGGCgccgUGCGcaagaaGGAGGCCCu -3' miRNA: 3'- gUUGGGAcGCCGa---GCGCc-----UCUCCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 43858 | 0.69 | 0.288786 |
Target: 5'- -cGCCCaGCGGCaucgucaccaucgUCGCGGuc-GGCCCc -3' miRNA: 3'- guUGGGaCGCCG-------------AGCGCCucuCCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 34049 | 0.69 | 0.292221 |
Target: 5'- -cACCCUGCaugGGCcuggcacguuuuacaUCGCGGcuGGGCCUg -3' miRNA: 3'- guUGGGACG---CCG---------------AGCGCCucUCCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 9144 | 0.69 | 0.303426 |
Target: 5'- uCAACgCCUGCuGCa-GCGGAGAGGacugCCg -3' miRNA: 3'- -GUUG-GGACGcCGagCGCCUCUCCg---GG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 19260 | 0.68 | 0.325319 |
Target: 5'- --gUUCUGCGaCgUCGUGGAuGAGGCCCu -3' miRNA: 3'- guuGGGACGCcG-AGCGCCU-CUCCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 12447 | 0.68 | 0.356302 |
Target: 5'- gCAGCCCUGCgccccuGGgUCGacaacGAGGGGCCg -3' miRNA: 3'- -GUUGGGACG------CCgAGCgc---CUCUCCGGg -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 59299 | 0.68 | 0.357102 |
Target: 5'- aGGCCCaccgcggcgucgaugGCGGCgUCGCGGGuGuuGCCCu -3' miRNA: 3'- gUUGGGa--------------CGCCG-AGCGCCU-CucCGGG- -5' |
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19278 | 5' | -61.7 | NC_004685.1 | + | 4705 | 0.68 | 0.364364 |
Target: 5'- gGGCUgUGCGGCUaCGCGaucaucccggccGAGGGGCauCCg -3' miRNA: 3'- gUUGGgACGCCGA-GCGC------------CUCUCCG--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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