miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19278 5' -61.7 NC_004685.1 + 43858 0.69 0.288786
Target:  5'- -cGCCCaGCGGCaucgucaccaucgUCGCGGuc-GGCCCc -3'
miRNA:   3'- guUGGGaCGCCG-------------AGCGCCucuCCGGG- -5'
19278 5' -61.7 NC_004685.1 + 44013 0.7 0.276024
Target:  5'- aAACCCU-CGGCgccgUGCGcaagaaGGAGGCCCu -3'
miRNA:   3'- gUUGGGAcGCCGa---GCGCc-----UCUCCGGG- -5'
19278 5' -61.7 NC_004685.1 + 64335 0.7 0.263081
Target:  5'- gCAACCCU-CGGCUCGUGGAcgcugacguuGAuGCUCg -3'
miRNA:   3'- -GUUGGGAcGCCGAGCGCCU----------CUcCGGG- -5'
19278 5' -61.7 NC_004685.1 + 3171 0.7 0.250635
Target:  5'- cCAGCgCUGUGGCcgccaaggCGCGG-GAGGCgCg -3'
miRNA:   3'- -GUUGgGACGCCGa-------GCGCCuCUCCGgG- -5'
19278 5' -61.7 NC_004685.1 + 37855 0.7 0.244596
Target:  5'- aUAGCCCUGCGGCa-GCGGGaucGAcGCCg -3'
miRNA:   3'- -GUUGGGACGCCGagCGCCU---CUcCGGg -5'
19278 5' -61.7 NC_004685.1 + 19229 0.7 0.238679
Target:  5'- ---gCCUGCGGUUCGCGccGAGucuGCCCa -3'
miRNA:   3'- guugGGACGCCGAGCGCcuCUC---CGGG- -5'
19278 5' -61.7 NC_004685.1 + 26853 0.71 0.205654
Target:  5'- -cGCCC-GCGGUggggaGUGGAgcGAGGCCCa -3'
miRNA:   3'- guUGGGaCGCCGag---CGCCU--CUCCGGG- -5'
19278 5' -61.7 NC_004685.1 + 40722 0.72 0.190673
Target:  5'- aCGACCCgaaGgGGC-CGUgGGAGGGGCCg -3'
miRNA:   3'- -GUUGGGa--CgCCGaGCG-CCUCUCCGGg -5'
19278 5' -61.7 NC_004685.1 + 60409 0.72 0.190673
Target:  5'- uGGCCCUGCaGCUguugacgcaucaCGCGGGGuuucggcGGCCCc -3'
miRNA:   3'- gUUGGGACGcCGA------------GCGCCUCu------CCGGG- -5'
19278 5' -61.7 NC_004685.1 + 45246 0.72 0.181225
Target:  5'- gCGACCaguUGCGGgUCGgGGGGuuGCCCg -3'
miRNA:   3'- -GUUGGg--ACGCCgAGCgCCUCucCGGG- -5'
19278 5' -61.7 NC_004685.1 + 32901 0.73 0.151356
Target:  5'- cCAGCCCUGCGGCUCGgGccgccagucGAaGGGCgCg -3'
miRNA:   3'- -GUUGGGACGCCGAGCgC---------CUcUCCGgG- -5'
19278 5' -61.7 NC_004685.1 + 25698 0.74 0.14368
Target:  5'- gUAGCCCaGCGGCaggucuuugCGCGGGGuGGGCCa -3'
miRNA:   3'- -GUUGGGaCGCCGa--------GCGCCUC-UCCGGg -5'
19278 5' -61.7 NC_004685.1 + 66565 0.76 0.091554
Target:  5'- gCGGCCCUGCGGaa-GCGGuu-GGCCCu -3'
miRNA:   3'- -GUUGGGACGCCgagCGCCucuCCGGG- -5'
19278 5' -61.7 NC_004685.1 + 65363 1.11 0.00025
Target:  5'- uCAACCCUGCGGCUCGCGGAGAGGCCCg -3'
miRNA:   3'- -GUUGGGACGCCGAGCGCCUCUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.