Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 37959 | 0.73 | 0.170736 |
Target: 5'- uACAcgGUGCCCgAaggcguggaugagaUUCGCCCGCGCCUg -3' miRNA: 3'- -UGUugUACGGGgU--------------AGGCGGGCGCGGA- -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 41625 | 0.72 | 0.211401 |
Target: 5'- gGCGACcucaGCCUCAgccUUgGCCCGCGCCUu -3' miRNA: 3'- -UGUUGua--CGGGGU---AGgCGGGCGCGGA- -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 44743 | 0.7 | 0.258219 |
Target: 5'- cCGGCGUGCCCUgguggGUCgGaCCCGaCGCCg -3' miRNA: 3'- uGUUGUACGGGG-----UAGgC-GGGC-GCGGa -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 48210 | 0.66 | 0.486468 |
Target: 5'- cGCggUAUGUCUCga-CGCCCGUGUCg -3' miRNA: 3'- -UGuuGUACGGGGuagGCGGGCGCGGa -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 48236 | 0.66 | 0.486468 |
Target: 5'- aAC-ACcgGCCgCCAguagCCGCCUGUGCa- -3' miRNA: 3'- -UGuUGuaCGG-GGUa---GGCGGGCGCGga -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 50507 | 0.66 | 0.490399 |
Target: 5'- cCGGCA-GCCCCGgagccauccaucuccUCCcacaGCCCGaCGCCg -3' miRNA: 3'- uGUUGUaCGGGGU---------------AGG----CGGGC-GCGGa -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 50751 | 0.7 | 0.264633 |
Target: 5'- uGCAcCuugGCCgCCAgcaUCuCGCCCGCGCCg -3' miRNA: 3'- -UGUuGua-CGG-GGU---AG-GCGGGCGCGGa -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 51470 | 0.7 | 0.277849 |
Target: 5'- gACGACA-GCUCgAUCCaGUCCGCGUCg -3' miRNA: 3'- -UGUUGUaCGGGgUAGG-CGGGCGCGGa -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 51665 | 0.66 | 0.448027 |
Target: 5'- uGCGGCAgcGCCUCGUCggUGCCCGCGg-- -3' miRNA: 3'- -UGUUGUa-CGGGGUAG--GCGGGCGCgga -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 56879 | 0.66 | 0.448027 |
Target: 5'- gACGGCAcGCCCgCcagCCGCUCG-GCCUg -3' miRNA: 3'- -UGUUGUaCGGG-Gua-GGCGGGCgCGGA- -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 58065 | 0.66 | 0.467043 |
Target: 5'- -gGugGUGUCCCA-CCGgCUGCGCUc -3' miRNA: 3'- ugUugUACGGGGUaGGCgGGCGCGGa -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 58635 | 0.67 | 0.420329 |
Target: 5'- cCGACAUGCgU--UCgGCCCGCGUCg -3' miRNA: 3'- uGUUGUACGgGguAGgCGGGCGCGGa -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 58803 | 0.69 | 0.328232 |
Target: 5'- cCGACAcGCCaCCGUCgGCacugcccgacaCCGCGCCUu -3' miRNA: 3'- uGUUGUaCGG-GGUAGgCG-----------GGCGCGGA- -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 59881 | 0.71 | 0.239737 |
Target: 5'- cGCAGCGUGCCCuCAg-CGCCaGCGUCa -3' miRNA: 3'- -UGUUGUACGGG-GUagGCGGgCGCGGa -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 64914 | 1.06 | 0.000612 |
Target: 5'- uACAACAUGCCCCAUCCGCCCGCGCCUc -3' miRNA: 3'- -UGUUGUACGGGGUAGGCGGGCGCGGA- -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 66795 | 0.68 | 0.376554 |
Target: 5'- gGCcGgGUGCCCgAUCCugGCCaGCGCCg -3' miRNA: 3'- -UGuUgUACGGGgUAGG--CGGgCGCGGa -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 68591 | 0.75 | 0.128702 |
Target: 5'- gACGACugAUGCCCCGcaUCCGCCCGCa--- -3' miRNA: 3'- -UGUUG--UACGGGGU--AGGCGGGCGcgga -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 68740 | 0.76 | 0.109529 |
Target: 5'- ---cCGUGCCCCGcaUCCGCCCGCaggacugcgGCCUg -3' miRNA: 3'- uguuGUACGGGGU--AGGCGGGCG---------CGGA- -5' |
|||||||
19280 | 5' | -60.7 | NC_004685.1 | + | 69539 | 0.68 | 0.349394 |
Target: 5'- aGCAGCu--CCCCggCCaccccggcagccgcGCCCGCGCCg -3' miRNA: 3'- -UGUUGuacGGGGuaGG--------------CGGGCGCGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home