miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19281 3' -60.6 NC_004685.1 + 64009 1.08 0.000504
Target:  5'- uGCCGGCCGAGCACCUGGUUGGCGAGUu -3'
miRNA:   3'- -CGGCCGGCUCGUGGACCAACCGCUCA- -5'
19281 3' -60.6 NC_004685.1 + 25621 0.73 0.190568
Target:  5'- cCCGGCCGAccgcaggucGCGgUUGGUUGGCGuGg -3'
miRNA:   3'- cGGCCGGCU---------CGUgGACCAACCGCuCa -5'
19281 3' -60.6 NC_004685.1 + 62825 0.72 0.216342
Target:  5'- gGCCGGCUGAgccgggGCACCcggGGUcacGGCGGGa -3'
miRNA:   3'- -CGGCCGGCU------CGUGGa--CCAa--CCGCUCa -5'
19281 3' -60.6 NC_004685.1 + 23882 0.72 0.221843
Target:  5'- gGCCGGCCGA-CGCCgagacguucgUGGUgaaguggcugGGCGAGg -3'
miRNA:   3'- -CGGCCGGCUcGUGG----------ACCAa---------CCGCUCa -5'
19281 3' -60.6 NC_004685.1 + 4176 0.72 0.225764
Target:  5'- cCCGGCCGAGCcuGCCcgacgguuacccggUGGUggcgugcGGCGAGg -3'
miRNA:   3'- cGGCCGGCUCG--UGG--------------ACCAa------CCGCUCa -5'
19281 3' -60.6 NC_004685.1 + 58327 0.71 0.239061
Target:  5'- cCCGGCCG-GCacaGCCUcGGUgucggGGCGGGUc -3'
miRNA:   3'- cGGCCGGCuCG---UGGA-CCAa----CCGCUCA- -5'
19281 3' -60.6 NC_004685.1 + 48367 0.7 0.270224
Target:  5'- uGCCGuaGCCGAcaGCGCCgguggaGGUgcUGGCGAGa -3'
miRNA:   3'- -CGGC--CGGCU--CGUGGa-----CCA--ACCGCUCa -5'
19281 3' -60.6 NC_004685.1 + 34582 0.7 0.283577
Target:  5'- gGCCGacgcuGCCGAGCGCCUGGc---CGAGg -3'
miRNA:   3'- -CGGC-----CGGCUCGUGGACCaaccGCUCa -5'
19281 3' -60.6 NC_004685.1 + 12798 0.69 0.319227
Target:  5'- cGCCcaGGCCGAGCGgCUGGcgGGCc--- -3'
miRNA:   3'- -CGG--CCGGCUCGUgGACCaaCCGcuca -5'
19281 3' -60.6 NC_004685.1 + 32739 0.69 0.334401
Target:  5'- aGCCGaGCCGGGUgguggaccggccGCCaGGUUGGUGGc- -3'
miRNA:   3'- -CGGC-CGGCUCG------------UGGaCCAACCGCUca -5'
19281 3' -60.6 NC_004685.1 + 15308 0.69 0.334401
Target:  5'- cGCaGGCCGAGUGCUUGGaggagcUGGCGuGa -3'
miRNA:   3'- -CGgCCGGCUCGUGGACCa-----ACCGCuCa -5'
19281 3' -60.6 NC_004685.1 + 37298 0.69 0.342184
Target:  5'- cGgCGGCCGAGCAgUUGGagcagugGGCGcAGg -3'
miRNA:   3'- -CgGCCGGCUCGUgGACCaa-----CCGC-UCa -5'
19281 3' -60.6 NC_004685.1 + 37945 0.69 0.350096
Target:  5'- aGCUGGCCG-GCACCUacacGGUgcccgaaGGCGuGg -3'
miRNA:   3'- -CGGCCGGCuCGUGGA----CCAa------CCGCuCa -5'
19281 3' -60.6 NC_004685.1 + 32271 0.69 0.350096
Target:  5'- cGCCGGUggcgCGGGCGguCCUGGUggcgcGGCGAc- -3'
miRNA:   3'- -CGGCCG----GCUCGU--GGACCAa----CCGCUca -5'
19281 3' -60.6 NC_004685.1 + 11389 0.69 0.350096
Target:  5'- gGCUGGCgcgaauCGAGCGCCgGGUUucGGCG-GUg -3'
miRNA:   3'- -CGGCCG------GCUCGUGGaCCAA--CCGCuCA- -5'
19281 3' -60.6 NC_004685.1 + 13630 0.68 0.358138
Target:  5'- -gCGGCCGAGCACgaCUGGgugcgcugGGCGuGc -3'
miRNA:   3'- cgGCCGGCUCGUG--GACCaa------CCGCuCa -5'
19281 3' -60.6 NC_004685.1 + 5416 0.68 0.366308
Target:  5'- aGCUGGCCGAGgaggacaGCCUGGccagGGUGGa- -3'
miRNA:   3'- -CGGCCGGCUCg------UGGACCaa--CCGCUca -5'
19281 3' -60.6 NC_004685.1 + 36593 0.68 0.366308
Target:  5'- gGCCGacGCCGAGgACCUGGcgGGUGc-- -3'
miRNA:   3'- -CGGC--CGGCUCgUGGACCaaCCGCuca -5'
19281 3' -60.6 NC_004685.1 + 9970 0.68 0.400251
Target:  5'- gGCUGGCCGAcGaCGCCgug--GGCGAGa -3'
miRNA:   3'- -CGGCCGGCU-C-GUGGaccaaCCGCUCa -5'
19281 3' -60.6 NC_004685.1 + 52724 0.67 0.417959
Target:  5'- cGCCGGCCGGGCAgUCgGGUUGauGCuGAa- -3'
miRNA:   3'- -CGGCCGGCUCGU-GGaCCAAC--CG-CUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.