Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19281 | 3' | -60.6 | NC_004685.1 | + | 37298 | 0.69 | 0.342184 |
Target: 5'- cGgCGGCCGAGCAgUUGGagcagugGGCGcAGg -3' miRNA: 3'- -CgGCCGGCUCGUgGACCaa-----CCGC-UCa -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 15308 | 0.69 | 0.334401 |
Target: 5'- cGCaGGCCGAGUGCUUGGaggagcUGGCGuGa -3' miRNA: 3'- -CGgCCGGCUCGUGGACCa-----ACCGCuCa -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 32739 | 0.69 | 0.334401 |
Target: 5'- aGCCGaGCCGGGUgguggaccggccGCCaGGUUGGUGGc- -3' miRNA: 3'- -CGGC-CGGCUCG------------UGGaCCAACCGCUca -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 12798 | 0.69 | 0.319227 |
Target: 5'- cGCCcaGGCCGAGCGgCUGGcgGGCc--- -3' miRNA: 3'- -CGG--CCGGCUCGUgGACCaaCCGcuca -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 34582 | 0.7 | 0.283577 |
Target: 5'- gGCCGacgcuGCCGAGCGCCUGGc---CGAGg -3' miRNA: 3'- -CGGC-----CGGCUCGUGGACCaaccGCUCa -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 48367 | 0.7 | 0.270224 |
Target: 5'- uGCCGuaGCCGAcaGCGCCgguggaGGUgcUGGCGAGa -3' miRNA: 3'- -CGGC--CGGCU--CGUGGa-----CCA--ACCGCUCa -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 58327 | 0.71 | 0.239061 |
Target: 5'- cCCGGCCG-GCacaGCCUcGGUgucggGGCGGGUc -3' miRNA: 3'- cGGCCGGCuCG---UGGA-CCAa----CCGCUCA- -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 4176 | 0.72 | 0.225764 |
Target: 5'- cCCGGCCGAGCcuGCCcgacgguuacccggUGGUggcgugcGGCGAGg -3' miRNA: 3'- cGGCCGGCUCG--UGG--------------ACCAa------CCGCUCa -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 23882 | 0.72 | 0.221843 |
Target: 5'- gGCCGGCCGA-CGCCgagacguucgUGGUgaaguggcugGGCGAGg -3' miRNA: 3'- -CGGCCGGCUcGUGG----------ACCAa---------CCGCUCa -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 62825 | 0.72 | 0.216342 |
Target: 5'- gGCCGGCUGAgccgggGCACCcggGGUcacGGCGGGa -3' miRNA: 3'- -CGGCCGGCU------CGUGGa--CCAa--CCGCUCa -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 25621 | 0.73 | 0.190568 |
Target: 5'- cCCGGCCGAccgcaggucGCGgUUGGUUGGCGuGg -3' miRNA: 3'- cGGCCGGCU---------CGUgGACCAACCGCuCa -5' |
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19281 | 3' | -60.6 | NC_004685.1 | + | 64009 | 1.08 | 0.000504 |
Target: 5'- uGCCGGCCGAGCACCUGGUUGGCGAGUu -3' miRNA: 3'- -CGGCCGGCUCGUGGACCAACCGCUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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