Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19281 | 5' | -56.7 | NC_004685.1 | + | 30038 | 0.75 | 0.229508 |
Target: 5'- cGGCaaggGCGGCgGuGGUGUcgGCAUCGCGGg -3' miRNA: 3'- aCUGa---CGUCGgU-CCACA--CGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 9020 | 0.73 | 0.317268 |
Target: 5'- -uGCUGC-GCgAGGUGUuCGUCGCGGu -3' miRNA: 3'- acUGACGuCGgUCCACAcGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 10484 | 0.72 | 0.348924 |
Target: 5'- cGGCaUGUuGCCGGGUGUGCuggaGUGGg -3' miRNA: 3'- aCUG-ACGuCGGUCCACACGuag-CGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 46767 | 0.71 | 0.391563 |
Target: 5'- cUGGCcGUcaucGGCCGGGgauugGUgGCGUCGCGGu -3' miRNA: 3'- -ACUGaCG----UCGGUCCa----CA-CGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 1912 | 0.71 | 0.391563 |
Target: 5'- -cGCUGCGGCCGcGGUugGCGUCaGCGGc -3' miRNA: 3'- acUGACGUCGGU-CCAcaCGUAG-CGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 31240 | 0.69 | 0.486287 |
Target: 5'- cGGCUcgGGCCuGGUcgGCAUCGCGGc -3' miRNA: 3'- aCUGAcgUCGGuCCAcaCGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 57555 | 0.69 | 0.505514 |
Target: 5'- -aGCUGCGcGCCAGGccgaucaucucgaUG-GCGUUGCGGu -3' miRNA: 3'- acUGACGU-CGGUCC-------------ACaCGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 25561 | 0.69 | 0.516795 |
Target: 5'- gGACUGCAGCgCGGuG-GUGCGcUUGuCGGa -3' miRNA: 3'- aCUGACGUCG-GUC-CaCACGU-AGC-GCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 6555 | 0.68 | 0.558593 |
Target: 5'- cGACaaGCAG-CAGGUGcGCAUCGUGc -3' miRNA: 3'- aCUGa-CGUCgGUCCACaCGUAGCGCc -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 41850 | 0.68 | 0.5692 |
Target: 5'- gUGcACgGCGGCCGGGUGUuCcgCGCcGGu -3' miRNA: 3'- -AC-UGaCGUCGGUCCACAcGuaGCG-CC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 38842 | 0.66 | 0.676621 |
Target: 5'- cGGCUGCcgcGCCGGucgGUGCc-CGCGGu -3' miRNA: 3'- aCUGACGu--CGGUCca-CACGuaGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 54013 | 0.66 | 0.708494 |
Target: 5'- -uGCUGcCGGUggaugugccaugCAGGUGUGCGgggaugcCGCGGg -3' miRNA: 3'- acUGAC-GUCG------------GUCCACACGUa------GCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 11740 | 0.76 | 0.21241 |
Target: 5'- gGACUGCGGCaGGGUcugGUGCAUCcCGGc -3' miRNA: 3'- aCUGACGUCGgUCCA---CACGUAGcGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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