Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19281 | 5' | -56.7 | NC_004685.1 | + | 1912 | 0.71 | 0.391563 |
Target: 5'- -cGCUGCGGCCGcGGUugGCGUCaGCGGc -3' miRNA: 3'- acUGACGUCGGU-CCAcaCGUAG-CGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 5429 | 0.66 | 0.676621 |
Target: 5'- gGACaGCcuGGCCAgGGUGgaccUGUAUCuGCGGg -3' miRNA: 3'- aCUGaCG--UCGGU-CCAC----ACGUAG-CGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 6021 | 0.69 | 0.516795 |
Target: 5'- cGAUgccGCGGCgGGGUGaUGUGUUGUGGc -3' miRNA: 3'- aCUGa--CGUCGgUCCAC-ACGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 6555 | 0.68 | 0.558593 |
Target: 5'- cGACaaGCAG-CAGGUGcGCAUCGUGc -3' miRNA: 3'- aCUGa-CGUCgGUCCACaCGUAGCGCc -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 7152 | 0.69 | 0.527136 |
Target: 5'- cGugUuCGGCgGGGUG-GcCAUCGCGGu -3' miRNA: 3'- aCugAcGUCGgUCCACaC-GUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 7740 | 0.67 | 0.644382 |
Target: 5'- aGGCccGCAGCCAGGacGUGCAcgacCGCa- -3' miRNA: 3'- aCUGa-CGUCGGUCCa-CACGUa---GCGcc -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 8667 | 0.66 | 0.665901 |
Target: 5'- cUGAgUGCGGCaCGacGaUGUGCAUCGcCGGc -3' miRNA: 3'- -ACUgACGUCG-GU--CcACACGUAGC-GCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 9020 | 0.73 | 0.317268 |
Target: 5'- -uGCUGC-GCgAGGUGUuCGUCGCGGu -3' miRNA: 3'- acUGACGuCGgUCCACAcGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 10484 | 0.72 | 0.348924 |
Target: 5'- cGGCaUGUuGCCGGGUGUGCuggaGUGGg -3' miRNA: 3'- aCUG-ACGuCGGUCCACACGuag-CGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 10536 | 0.66 | 0.708494 |
Target: 5'- -cGCcGCGGCCGGGUG-GCuucgacaaCGUGGg -3' miRNA: 3'- acUGaCGUCGGUCCACaCGua------GCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 11740 | 0.76 | 0.21241 |
Target: 5'- gGACUGCGGCaGGGUcugGUGCAUCcCGGc -3' miRNA: 3'- aCUGACGUCGgUCCA---CACGUAGcGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 14948 | 0.66 | 0.708494 |
Target: 5'- aUGGCggUGCGGCguGaGUucGUGCGUCGCu- -3' miRNA: 3'- -ACUG--ACGUCGguC-CA--CACGUAGCGcc -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 16234 | 0.72 | 0.33282 |
Target: 5'- aGACUGCGGCgAGGUaGUGCcgaccgccgacAUCGCcaaGGg -3' miRNA: 3'- aCUGACGUCGgUCCA-CACG-----------UAGCG---CC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 19909 | 0.66 | 0.67555 |
Target: 5'- gGGUUGCuGCCGaugacgcGG-GUGUAUCGCGGc -3' miRNA: 3'- aCUGACGuCGGU-------CCaCACGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 24978 | 0.66 | 0.687299 |
Target: 5'- gUGAUgaacaGCGGCCGGGUGUcCGgccCGgGGg -3' miRNA: 3'- -ACUGa----CGUCGGUCCACAcGUa--GCgCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 25561 | 0.69 | 0.516795 |
Target: 5'- gGACUGCAGCgCGGuG-GUGCGcUUGuCGGa -3' miRNA: 3'- aCUGACGUCG-GUC-CaCACGU-AGC-GCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 26935 | 0.73 | 0.317268 |
Target: 5'- cGGuCUGCGGgggugcaGGGUGUGCAcgUCGCGGa -3' miRNA: 3'- aCU-GACGUCgg-----UCCACACGU--AGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 30038 | 0.75 | 0.229508 |
Target: 5'- cGGCaaggGCGGCgGuGGUGUcgGCAUCGCGGg -3' miRNA: 3'- aCUGa---CGUCGgU-CCACA--CGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 31240 | 0.69 | 0.486287 |
Target: 5'- cGGCUcgGGCCuGGUcgGCAUCGCGGc -3' miRNA: 3'- aCUGAcgUCGGuCCAcaCGUAGCGCC- -5' |
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19281 | 5' | -56.7 | NC_004685.1 | + | 37088 | 0.7 | 0.476307 |
Target: 5'- gGGCcGguGCC-GGUGUGCugcgUGCGGu -3' miRNA: 3'- aCUGaCguCGGuCCACACGua--GCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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