miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19281 5' -56.7 NC_004685.1 + 37088 0.7 0.476307
Target:  5'- gGGCcGguGCC-GGUGUGCugcgUGCGGu -3'
miRNA:   3'- aCUGaCguCGGuCCACACGua--GCGCC- -5'
19281 5' -56.7 NC_004685.1 + 1912 0.71 0.391563
Target:  5'- -cGCUGCGGCCGcGGUugGCGUCaGCGGc -3'
miRNA:   3'- acUGACGUCGGU-CCAcaCGUAG-CGCC- -5'
19281 5' -56.7 NC_004685.1 + 46767 0.71 0.391563
Target:  5'- cUGGCcGUcaucGGCCGGGgauugGUgGCGUCGCGGu -3'
miRNA:   3'- -ACUGaCG----UCGGUCCa----CA-CGUAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 53076 0.71 0.382768
Target:  5'- cGAC---GGCCGGGUGUaGuCGUCGCGGu -3'
miRNA:   3'- aCUGacgUCGGUCCACA-C-GUAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 10484 0.72 0.348924
Target:  5'- cGGCaUGUuGCCGGGUGUGCuggaGUGGg -3'
miRNA:   3'- aCUG-ACGuCGGUCCACACGuag-CGCC- -5'
19281 5' -56.7 NC_004685.1 + 16234 0.72 0.33282
Target:  5'- aGACUGCGGCgAGGUaGUGCcgaccgccgacAUCGCcaaGGg -3'
miRNA:   3'- aCUGACGUCGgUCCA-CACG-----------UAGCG---CC- -5'
19281 5' -56.7 NC_004685.1 + 9020 0.73 0.317268
Target:  5'- -uGCUGC-GCgAGGUGUuCGUCGCGGu -3'
miRNA:   3'- acUGACGuCGgUCCACAcGUAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 26935 0.73 0.317268
Target:  5'- cGGuCUGCGGgggugcaGGGUGUGCAcgUCGCGGa -3'
miRNA:   3'- aCU-GACGUCgg-----UCCACACGU--AGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 40852 0.74 0.267182
Target:  5'- aUGGuuCUGCAGCgC-GGUGcugGCGUCGCGGg -3'
miRNA:   3'- -ACU--GACGUCG-GuCCACa--CGUAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 30038 0.75 0.229508
Target:  5'- cGGCaaggGCGGCgGuGGUGUcgGCAUCGCGGg -3'
miRNA:   3'- aCUGa---CGUCGgU-CCACA--CGUAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 37876 0.75 0.229508
Target:  5'- cGAC-GCcgacuGCCGGGUGUGCA-CGUGGa -3'
miRNA:   3'- aCUGaCGu----CGGUCCACACGUaGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 11740 0.76 0.21241
Target:  5'- gGACUGCGGCaGGGUcugGUGCAUCcCGGc -3'
miRNA:   3'- aCUGACGUCGgUCCA---CACGUAGcGCC- -5'
19281 5' -56.7 NC_004685.1 + 64043 1.1 0.00081
Target:  5'- cUGACUGCAGCCAGGUGUGCAUCGCGGu -3'
miRNA:   3'- -ACUGACGUCGGUCCACACGUAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.