Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19282 | 3' | -62 | NC_004685.1 | + | 57364 | 0.68 | 0.33594 |
Target: 5'- -gCUUGGacaccaCCCGacGCCagcUGCGCAGCGUc -3' miRNA: 3'- agGAACCg-----GGGC--CGGa--ACGCGUCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 4451 | 0.68 | 0.33594 |
Target: 5'- gUUCggGcGCCCCGGCgagUGCGUcgaugagacgAGCGCg -3' miRNA: 3'- -AGGaaC-CGGGGCCGga-ACGCG----------UCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 2895 | 0.68 | 0.33594 |
Target: 5'- gCCaggaucgGGCaCCCGGCCccagUGC-CGGUGCg -3' miRNA: 3'- aGGaa-----CCG-GGGCCGGa---ACGcGUCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 61732 | 0.68 | 0.33594 |
Target: 5'- cUCCUcgcagaUGGCCuuGGCUcgGUcCAGCGUc -3' miRNA: 3'- -AGGA------ACCGGggCCGGaaCGcGUCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 49994 | 0.68 | 0.328294 |
Target: 5'- gCCUcGGCCCgccaCGGCCgcucGUGCAGC-Ca -3' miRNA: 3'- aGGAaCCGGG----GCCGGaa--CGCGUCGcG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 49705 | 0.68 | 0.328294 |
Target: 5'- aCCaccgGGCgCgGGCCUUGUcCAGCGUc -3' miRNA: 3'- aGGaa--CCGgGgCCGGAACGcGUCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 44311 | 0.68 | 0.313389 |
Target: 5'- ---aUGGCCCCaGCUggGCG-GGCGCa -3' miRNA: 3'- aggaACCGGGGcCGGaaCGCgUCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 38238 | 0.68 | 0.313389 |
Target: 5'- gUCCUcGGCCCCGGCaccaucgGCGaGGC-Ca -3' miRNA: 3'- -AGGAaCCGGGGCCGgaa----CGCgUCGcG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 25551 | 0.68 | 0.299002 |
Target: 5'- gCCggGGUCCCauuuGCCcUGCGCcGCGCc -3' miRNA: 3'- aGGaaCCGGGGc---CGGaACGCGuCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 68396 | 0.69 | 0.292002 |
Target: 5'- gUCCgagugUGcGCCCCGGguCCgaUGCGCcacGCGCg -3' miRNA: 3'- -AGGa----AC-CGGGGCC--GGa-ACGCGu--CGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 26460 | 0.69 | 0.278389 |
Target: 5'- gCCUUGGCCUCGGUCacgaUGauCuGCGCa -3' miRNA: 3'- aGGAACCGGGGCCGGa---ACgcGuCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 3667 | 0.69 | 0.271774 |
Target: 5'- gCC-UGGCCCgcuucucggCGGCUUUggugugggugGCGCAGCGUu -3' miRNA: 3'- aGGaACCGGG---------GCCGGAA----------CGCGUCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 2863 | 0.69 | 0.271774 |
Target: 5'- -gCUUGGgCUugCGGCCggUGCGCAcgGCGCu -3' miRNA: 3'- agGAACCgGG--GCCGGa-ACGCGU--CGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 33169 | 0.7 | 0.240585 |
Target: 5'- aCCggUGGCaCCGGCCggugguggGCGcCGGUGCg -3' miRNA: 3'- aGGa-ACCGgGGCCGGaa------CGC-GUCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 21282 | 0.7 | 0.240585 |
Target: 5'- aCCgaGGCCCUGGUgg-GCGCGGCu- -3' miRNA: 3'- aGGaaCCGGGGCCGgaaCGCGUCGcg -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 68184 | 0.7 | 0.23705 |
Target: 5'- aCCUcaugcggGGCCagcggguucucuacgUCGGCCUaGCGguGCGCg -3' miRNA: 3'- aGGAa------CCGG---------------GGCCGGAaCGCguCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 10077 | 0.7 | 0.234718 |
Target: 5'- aCCUggGGCCgUGGCUggaagGCGCAGCcgguGCg -3' miRNA: 3'- aGGAa-CCGGgGCCGGaa---CGCGUCG----CG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 148 | 0.7 | 0.217833 |
Target: 5'- gCCggggUGGCCggggagcugcUCGGCuugccCUUGCGCGGCGUg -3' miRNA: 3'- aGGa---ACCGG----------GGCCG-----GAACGCGUCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 17160 | 0.71 | 0.21244 |
Target: 5'- aCCUgaUGGCgUCGGCgUUcGcCGCGGCGCu -3' miRNA: 3'- aGGA--ACCGgGGCCGgAA-C-GCGUCGCG- -5' |
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19282 | 3' | -62 | NC_004685.1 | + | 61553 | 0.71 | 0.199964 |
Target: 5'- aUCCUcGGagaugaugcggaaCCCGGCCUcgGC-CAGCGCg -3' miRNA: 3'- -AGGAaCCg------------GGGCCGGAa-CGcGUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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