miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19282 5' -53.9 NC_004685.1 + 42434 0.67 0.806967
Target:  5'- gGGCACCG-GCGgcGUACGACaacugUGCGg -3'
miRNA:   3'- aCCGUGGCgCGUa-CAUGCUGaa---GUGC- -5'
19282 5' -53.9 NC_004685.1 + 30835 0.67 0.806967
Target:  5'- gUGGCACCGCGgGcac-CGACcggCGCGg -3'
miRNA:   3'- -ACCGUGGCGCgUacauGCUGaa-GUGC- -5'
19282 5' -53.9 NC_004685.1 + 45754 0.67 0.797445
Target:  5'- cGGgGCgGCGCGUGUuCG-CUgCGCGg -3'
miRNA:   3'- aCCgUGgCGCGUACAuGCuGAaGUGC- -5'
19282 5' -53.9 NC_004685.1 + 59299 0.67 0.797445
Target:  5'- aGGCccACCGCgGCGUcgaugGCGGCgUCGCGg -3'
miRNA:   3'- aCCG--UGGCG-CGUAca---UGCUGaAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 4686 0.67 0.787752
Target:  5'- -cGCACCGaGCGuccuguacgggcUGUGCGGCUaCGCGa -3'
miRNA:   3'- acCGUGGCgCGU------------ACAUGCUGAaGUGC- -5'
19282 5' -53.9 NC_004685.1 + 41244 0.67 0.787752
Target:  5'- cUGGCG-CGCGCGUu--CGGCUuggUCGCGg -3'
miRNA:   3'- -ACCGUgGCGCGUAcauGCUGA---AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 33092 0.67 0.777899
Target:  5'- aGcGCACCGCcCAguugGUgcGCGACUggaUCGCGg -3'
miRNA:   3'- aC-CGUGGCGcGUa---CA--UGCUGA---AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 45363 0.67 0.767898
Target:  5'- aGGCGCUGaucgaCGCggGUAUGuuCUUCGCGa -3'
miRNA:   3'- aCCGUGGC-----GCGuaCAUGCu-GAAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 3804 0.68 0.757759
Target:  5'- cGGCACUGUGg----GCGACUgUCACGg -3'
miRNA:   3'- aCCGUGGCGCguacaUGCUGA-AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 8425 0.68 0.747493
Target:  5'- aUGGC-CCGCGUagccGUGgACGAacUCACGg -3'
miRNA:   3'- -ACCGuGGCGCG----UACaUGCUgaAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 23057 0.68 0.737111
Target:  5'- cGGCGgUGUGCAaaucuucgACGACUUCGCu -3'
miRNA:   3'- aCCGUgGCGCGUaca-----UGCUGAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 57075 0.68 0.737111
Target:  5'- -cGCGCCGCGCAgGUugGcccgaacauACUUCAgGu -3'
miRNA:   3'- acCGUGGCGCGUaCAugC---------UGAAGUgC- -5'
19282 5' -53.9 NC_004685.1 + 11793 0.68 0.726626
Target:  5'- aGGCGCgGCGCAUGgucgaaGAgUUCAaCGc -3'
miRNA:   3'- aCCGUGgCGCGUACaug---CUgAAGU-GC- -5'
19282 5' -53.9 NC_004685.1 + 60260 0.68 0.725572
Target:  5'- cGGCGCCGgucggccCGCAUGggugAUGGuCUUCGCc -3'
miRNA:   3'- aCCGUGGC-------GCGUACa---UGCU-GAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 14060 0.68 0.716047
Target:  5'- cGGCGCC-CGCGaGcGCGGCUUCGg- -3'
miRNA:   3'- aCCGUGGcGCGUaCaUGCUGAAGUgc -5'
19282 5' -53.9 NC_004685.1 + 24477 0.68 0.716047
Target:  5'- cGGCAacCCGCGCG---ACGACcugUUCGCGc -3'
miRNA:   3'- aCCGU--GGCGCGUacaUGCUG---AAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 43355 0.69 0.698956
Target:  5'- cGGCAUCGCGCAgcaggACGGCUccuacccgaaccgcuUCAaCGg -3'
miRNA:   3'- aCCGUGGCGCGUaca--UGCUGA---------------AGU-GC- -5'
19282 5' -53.9 NC_004685.1 + 42503 0.69 0.694656
Target:  5'- cGGCAgCCGCcgGUGcugACGugUUCGCGg -3'
miRNA:   3'- aCCGU-GGCGcgUACa--UGCugAAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 27136 0.69 0.66215
Target:  5'- cGGCuCUG-GCGUGUGCGACgUUgACGa -3'
miRNA:   3'- aCCGuGGCgCGUACAUGCUG-AAgUGC- -5'
19282 5' -53.9 NC_004685.1 + 67228 0.7 0.629393
Target:  5'- cUGGCuCCG-GCAUGUugGACcgCGCc -3'
miRNA:   3'- -ACCGuGGCgCGUACAugCUGaaGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.