miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19283 3' -54.5 NC_004685.1 + 9934 0.66 0.823586
Target:  5'- cCGGGCCgUGACAaaCGGAUCAcCGAGg -3'
miRNA:   3'- cGUCUGG-GCUGUg-GCCUAGUaGCUCg -5'
19283 3' -54.5 NC_004685.1 + 4446 0.66 0.82269
Target:  5'- gGCGGugCCGcUACCGGcacaaacGUCAgcguugCGGGUg -3'
miRNA:   3'- -CGUCugGGCuGUGGCC-------UAGUa-----GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 65683 0.66 0.82269
Target:  5'- cCAG-CCCGucgacuACACCGGGccggcugUCGUCGuGCc -3'
miRNA:   3'- cGUCuGGGC------UGUGGCCU-------AGUAGCuCG- -5'
19283 3' -54.5 NC_004685.1 + 15231 0.66 0.814546
Target:  5'- gGCGGuCCCGACugUcu-UCAUCG-GCg -3'
miRNA:   3'- -CGUCuGGGCUGugGccuAGUAGCuCG- -5'
19283 3' -54.5 NC_004685.1 + 10425 0.66 0.814546
Target:  5'- uGCAGACCaCGuuCGcCCGGucgcUCAUCGAaaacgGCa -3'
miRNA:   3'- -CGUCUGG-GCu-GU-GGCCu---AGUAGCU-----CG- -5'
19283 3' -54.5 NC_004685.1 + 66 0.66 0.814546
Target:  5'- aGCAGAaccCCCGGCAUCGGGggg--GGGUg -3'
miRNA:   3'- -CGUCU---GGGCUGUGGCCUaguagCUCG- -5'
19283 3' -54.5 NC_004685.1 + 18544 0.66 0.814546
Target:  5'- -gGGACguugCUGAUgGCCGGAUCggCGGGCa -3'
miRNA:   3'- cgUCUG----GGCUG-UGGCCUAGuaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 65317 0.66 0.814546
Target:  5'- cGCGGaACUCGACA--GGcUCAUCGAGg -3'
miRNA:   3'- -CGUC-UGGGCUGUggCCuAGUAGCUCg -5'
19283 3' -54.5 NC_004685.1 + 20797 0.66 0.814546
Target:  5'- gGCAGcCCCGucgGCACCGag--GUCGAGUa -3'
miRNA:   3'- -CGUCuGGGC---UGUGGCcuagUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 3636 0.66 0.814546
Target:  5'- cCAGAUUCGACucuucgGCCGuGAgCGUUGAGCc -3'
miRNA:   3'- cGUCUGGGCUG------UGGC-CUaGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 745 0.67 0.805323
Target:  5'- -aGGugCCGACgcaGCCGGAcagcgaaCAUCGuGGCa -3'
miRNA:   3'- cgUCugGGCUG---UGGCCUa------GUAGC-UCG- -5'
19283 3' -54.5 NC_004685.1 + 51324 0.67 0.795926
Target:  5'- cGCuGAUcgucaccucaUCGcCACCGGccgCAUCGAGCa -3'
miRNA:   3'- -CGuCUG----------GGCuGUGGCCua-GUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 44739 0.67 0.795926
Target:  5'- aGCGaACCCG-CGuCgGGGUCGgucuUCGAGCg -3'
miRNA:   3'- -CGUcUGGGCuGU-GgCCUAGU----AGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 13207 0.67 0.795926
Target:  5'- gGCAGGCCgGACugUaucaguGGGU-GUCGGGUg -3'
miRNA:   3'- -CGUCUGGgCUGugG------CCUAgUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 38580 0.67 0.795926
Target:  5'- uGCgAGGCCCuugcuGAUGCCGaagucggCGUCGAGCg -3'
miRNA:   3'- -CG-UCUGGG-----CUGUGGCcua----GUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 60919 0.67 0.795926
Target:  5'- uCAaGCCaCGACGgCGGcagcuccgguauGUCGUCGAGCu -3'
miRNA:   3'- cGUcUGG-GCUGUgGCC------------UAGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 22257 0.67 0.795926
Target:  5'- gGUGGACCUGuccaagguGCGCUGG-UCggCGGGCg -3'
miRNA:   3'- -CGUCUGGGC--------UGUGGCCuAGuaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 12875 0.67 0.794978
Target:  5'- gGCAGACCUGGCAUCcgaggGGGUgacgaacCAUCGAcacgaaGCg -3'
miRNA:   3'- -CGUCUGGGCUGUGG-----CCUA-------GUAGCU------CG- -5'
19283 3' -54.5 NC_004685.1 + 44897 0.67 0.786367
Target:  5'- cGCGGACCCcggcucauGCACCGccaGcgCAUCGAacGCa -3'
miRNA:   3'- -CGUCUGGGc-------UGUGGC---CuaGUAGCU--CG- -5'
19283 3' -54.5 NC_004685.1 + 42654 0.67 0.786367
Target:  5'- gGCGG-CCaaggcaGGCACCGGAUCAgccgcuacggUCGuGUc -3'
miRNA:   3'- -CGUCuGGg-----CUGUGGCCUAGU----------AGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.