Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 49692 | 0.69 | 0.358138 |
Target: 5'- aGACggGUGGCgaaCCA-CCGGgcGCGGGCc -3' miRNA: 3'- gCUGa-CGCCG---GGUaGGCCauCGCCUG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 11740 | 0.69 | 0.357328 |
Target: 5'- gGACUGCGGCaggGUCUGGUgcaucccGGCaaGGACg -3' miRNA: 3'- gCUGACGCCGgg-UAGGCCA-------UCG--CCUG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 1181 | 0.7 | 0.334401 |
Target: 5'- gGACUgGCGGCCCcgCauCGGacUGGCGGGg -3' miRNA: 3'- gCUGA-CGCCGGGuaG--GCC--AUCGCCUg -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 44731 | 0.7 | 0.334401 |
Target: 5'- cCGugUGCGGCaCCGgcgugccCUGGUGGguCGGACc -3' miRNA: 3'- -GCugACGCCG-GGUa------GGCCAUC--GCCUG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 24582 | 0.7 | 0.326749 |
Target: 5'- gGACgGCGGaCCCGagCGGgcGCcGGACa -3' miRNA: 3'- gCUGaCGCC-GGGUagGCCauCG-CCUG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 56542 | 0.7 | 0.319227 |
Target: 5'- uCGACguagGCGGCCC-UCCGcGUcGCccGGGCg -3' miRNA: 3'- -GCUGa---CGCCGGGuAGGC-CAuCG--CCUG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 18096 | 0.71 | 0.268266 |
Target: 5'- cCGGCUGUcgcggaucaacuacGGCCCGUCCGaGUucagGGCGGugGCa -3' miRNA: 3'- -GCUGACG--------------CCGGGUAGGC-CA----UCGCC--UG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 20989 | 0.72 | 0.251151 |
Target: 5'- uCGACU-CGGCCCGUCCGcUGGUGucGACu -3' miRNA: 3'- -GCUGAcGCCGGGUAGGCcAUCGC--CUG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 53857 | 0.72 | 0.221843 |
Target: 5'- uCGAUgaUGCGGCCguugcgCAUCCGGUAGaucggcuGGACg -3' miRNA: 3'- -GCUG--ACGCCGG------GUAGGCCAUCg------CCUG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 68535 | 0.75 | 0.139476 |
Target: 5'- gGGCUGUGGCCCcggccaGUCCGau-GCGGGCg -3' miRNA: 3'- gCUGACGCCGGG------UAGGCcauCGCCUG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 33164 | 0.77 | 0.103995 |
Target: 5'- uCGACaccgGUGGCaCCggCCGGUGGUGGGCg -3' miRNA: 3'- -GCUGa---CGCCG-GGuaGGCCAUCGCCUG- -5' |
|||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 61175 | 1.08 | 0.000581 |
Target: 5'- uCGACUGCGGCCCAUCCGGUAGCGGACc -3' miRNA: 3'- -GCUGACGCCGGGUAGGCCAUCGCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home