miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19284 3' -54.9 NC_004685.1 + 65463 0.66 0.761212
Target:  5'- cCGAACGCgUCGC-CGGguGCGagaaGGCg -3'
miRNA:   3'- -GCUUGUGgAGCGcGUCguCGCag--UUG- -5'
19284 3' -54.9 NC_004685.1 + 43345 0.66 0.760197
Target:  5'- aGAuCACCuacggcaUCGCGCAGCAG-GaCGGCu -3'
miRNA:   3'- gCUuGUGG-------AGCGCGUCGUCgCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 41527 0.66 0.757144
Target:  5'- uCGGugGucuCCUUGCGCAGCuccucgguguugcGCGUCAGg -3'
miRNA:   3'- -GCUugU---GGAGCGCGUCGu------------CGCAGUUg -5'
19284 3' -54.9 NC_004685.1 + 25226 0.67 0.751003
Target:  5'- uGAuccACACCagCGCGCAGguGaCGagGACu -3'
miRNA:   3'- gCU---UGUGGa-GCGCGUCguC-GCagUUG- -5'
19284 3' -54.9 NC_004685.1 + 41710 0.67 0.751003
Target:  5'- uGGuCACCUCGCccgucGUGGCGGUGggCGGCg -3'
miRNA:   3'- gCUuGUGGAGCG-----CGUCGUCGCa-GUUG- -5'
19284 3' -54.9 NC_004685.1 + 27665 0.67 0.751003
Target:  5'- ---cCACCUCGuUGCcGuCAGCGUCGAUc -3'
miRNA:   3'- gcuuGUGGAGC-GCGuC-GUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 31053 0.67 0.734425
Target:  5'- cCGAugACCUacgcgaaGCGCucggcgacauggguGCGGCGcUCGACg -3'
miRNA:   3'- -GCUugUGGAg------CGCGu-------------CGUCGC-AGUUG- -5'
19284 3' -54.9 NC_004685.1 + 32232 0.67 0.730238
Target:  5'- aGAACGCCgacagCGCGUugAGC-GCGUugcCGACg -3'
miRNA:   3'- gCUUGUGGa----GCGCG--UCGuCGCA---GUUG- -5'
19284 3' -54.9 NC_004685.1 + 55575 0.67 0.730238
Target:  5'- aGAaucuGCGCCUCGuCGgacauCAGCA-CGUCGACg -3'
miRNA:   3'- gCU----UGUGGAGC-GC-----GUCGUcGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 64129 0.67 0.730238
Target:  5'- gCGAACGCCgucUUGCGCAuGCAGgggugggaaaCGUCGGa -3'
miRNA:   3'- -GCUUGUGG---AGCGCGU-CGUC----------GCAGUUg -5'
19284 3' -54.9 NC_004685.1 + 64494 0.67 0.730238
Target:  5'- uCGAGCGCgUUGCGCuucuGCGGCuUCcACc -3'
miRNA:   3'- -GCUUGUGgAGCGCGu---CGUCGcAGuUG- -5'
19284 3' -54.9 NC_004685.1 + 50053 0.67 0.726036
Target:  5'- aCGA--GCCUUGCGCAGCuccucggucuucuGCGUguACu -3'
miRNA:   3'- -GCUugUGGAGCGCGUCGu------------CGCAguUG- -5'
19284 3' -54.9 NC_004685.1 + 31809 0.67 0.719706
Target:  5'- aCGugcACACC-CG-GCAGuCGGCGUCGAUc -3'
miRNA:   3'- -GCu--UGUGGaGCgCGUC-GUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 43152 0.67 0.719706
Target:  5'- gCGAcgcGCACCgaGUGCGGCGGCGa-GACg -3'
miRNA:   3'- -GCU---UGUGGagCGCGUCGUCGCagUUG- -5'
19284 3' -54.9 NC_004685.1 + 19780 0.67 0.713344
Target:  5'- uCGGACACCgagaaCGCGUGGCaguaccgcagugaguGGCG-CGACu -3'
miRNA:   3'- -GCUUGUGGa----GCGCGUCG---------------UCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 24902 0.67 0.713344
Target:  5'- aGAACagcuugucuucgcagGCC-CGCGCGGUgucGGCGUCGGg -3'
miRNA:   3'- gCUUG---------------UGGaGCGCGUCG---UCGCAGUUg -5'
19284 3' -54.9 NC_004685.1 + 8694 0.67 0.709087
Target:  5'- cCGAGgGCCgCGCGUacuGGUGGCG-CAACu -3'
miRNA:   3'- -GCUUgUGGaGCGCG---UCGUCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 68722 0.67 0.699467
Target:  5'- cCGAACACUUgagggucgacgaggCGCGCggaugcggguugaccAGCAGaaaGUCAACa -3'
miRNA:   3'- -GCUUGUGGA--------------GCGCG---------------UCGUCg--CAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 49701 0.67 0.698395
Target:  5'- gCGAAcCACCggGCGCGGgccuugucCAGCGUcCAGCu -3'
miRNA:   3'- -GCUU-GUGGagCGCGUC--------GUCGCA-GUUG- -5'
19284 3' -54.9 NC_004685.1 + 65943 0.67 0.698395
Target:  5'- gCGAACACgUCGCcCAGCGugacguggcgcuGCGcCAGCc -3'
miRNA:   3'- -GCUUGUGgAGCGcGUCGU------------CGCaGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.