miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19284 5' -64.3 NC_004685.1 + 2905 0.67 0.280279
Target:  5'- gGCACCCGGCcccaGugCCggugCGGCgGgCCAg -3'
miRNA:   3'- -UGUGGGCCGa---CugGGa---GCCG-CgGGUa -5'
19284 5' -64.3 NC_004685.1 + 3427 0.71 0.141411
Target:  5'- aACACCCugcGGCUGACCCgcugcgaucguugCGGCGCggcagCCAa -3'
miRNA:   3'- -UGUGGG---CCGACUGGGa------------GCCGCG-----GGUa -5'
19284 5' -64.3 NC_004685.1 + 6405 0.66 0.307138
Target:  5'- gACACUCGGCgGAUUCUucuccggCGGCGCCa-- -3'
miRNA:   3'- -UGUGGGCCGaCUGGGA-------GCCGCGGgua -5'
19284 5' -64.3 NC_004685.1 + 6838 0.67 0.2737
Target:  5'- gGCGCaCCGGCucccgccgUGACCC-CgGGUGCCCc- -3'
miRNA:   3'- -UGUG-GGCCG--------ACUGGGaG-CCGCGGGua -5'
19284 5' -64.3 NC_004685.1 + 11712 0.66 0.307138
Target:  5'- uCACCCGGCUGugCgCUgacaccgcgcaCGGCccgcuguGCCCGa -3'
miRNA:   3'- uGUGGGCCGACugG-GA-----------GCCG-------CGGGUa -5'
19284 5' -64.3 NC_004685.1 + 12454 0.66 0.32986
Target:  5'- aGCGCCCGGUcagcUGACCagucgacgUUGGCGCgCGc -3'
miRNA:   3'- -UGUGGGCCG----ACUGGg-------AGCCGCGgGUa -5'
19284 5' -64.3 NC_004685.1 + 14076 0.67 0.267245
Target:  5'- --uCCCGGCUGAgCUggacaCGGCGaCCCGg -3'
miRNA:   3'- uguGGGCCGACUgGGa----GCCGC-GGGUa -5'
19284 5' -64.3 NC_004685.1 + 14674 0.67 0.2737
Target:  5'- -gACCgaGGgUGACCCcgaggCGGUGCCCGa -3'
miRNA:   3'- ugUGGg-CCgACUGGGa----GCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 19352 0.71 0.146639
Target:  5'- uGCGCCgCGGCgaagucGGCCC-CGGCaGCCCGc -3'
miRNA:   3'- -UGUGG-GCCGa-----CUGGGaGCCG-CGGGUa -5'
19284 5' -64.3 NC_004685.1 + 21918 0.66 0.33745
Target:  5'- uACGCCCguguGGCUGGCagaacgaCUCGGCGUggcauccgcaCCAUc -3'
miRNA:   3'- -UGUGGG----CCGACUGg------GAGCCGCG----------GGUA- -5'
19284 5' -64.3 NC_004685.1 + 22507 0.67 0.254705
Target:  5'- -gGCUCGGCUGAUCUucuccgCGGUGUCCGc -3'
miRNA:   3'- ugUGGGCCGACUGGGa-----GCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 22872 0.68 0.231078
Target:  5'- gGCGCCCGGCUG-CCgacaUCGGcCGCUgAc -3'
miRNA:   3'- -UGUGGGCCGACuGGg---AGCC-GCGGgUa -5'
19284 5' -64.3 NC_004685.1 + 24478 0.67 0.254705
Target:  5'- uCACCCGGCUcGGCCg-CGGCGUaCAg -3'
miRNA:   3'- uGUGGGCCGA-CUGGgaGCCGCGgGUa -5'
19284 5' -64.3 NC_004685.1 + 33655 0.69 0.204171
Target:  5'- gGCAUCCGGCUgcGACUCaaGGCGUUCAg -3'
miRNA:   3'- -UGUGGGCCGA--CUGGGagCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 36853 0.68 0.248618
Target:  5'- uCGCgCGGCUcGACaCCgCGGCGUCCGg -3'
miRNA:   3'- uGUGgGCCGA-CUG-GGaGCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 37007 0.69 0.189363
Target:  5'- aAguCCUGGCUGGCCCcgCGGuUGUCCAg -3'
miRNA:   3'- -UguGGGCCGACUGGGa-GCC-GCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 39216 0.67 0.286984
Target:  5'- cCGCCUGGC-GGCggCUUCGGCGCCgGc -3'
miRNA:   3'- uGUGGGCCGaCUG--GGAGCCGCGGgUa -5'
19284 5' -64.3 NC_004685.1 + 39472 0.68 0.248618
Target:  5'- uCGCCCaGaUGGCCg-CGGCGCCCAg -3'
miRNA:   3'- uGUGGGcCgACUGGgaGCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 39965 0.69 0.209326
Target:  5'- cGCACCuCGGgccagaccCUGACCCU-GGCGCaCCGg -3'
miRNA:   3'- -UGUGG-GCC--------GACUGGGAgCCGCG-GGUa -5'
19284 5' -64.3 NC_004685.1 + 40594 0.66 0.315061
Target:  5'- cGCGgCCGGUU--CCCUCGGCgGCaCCAUc -3'
miRNA:   3'- -UGUgGGCCGAcuGGGAGCCG-CG-GGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.