miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19284 5' -64.3 NC_004685.1 + 50332 0.68 0.248618
Target:  5'- cCACCCGGU--GCCCcugUCGucGCGCCCAc -3'
miRNA:   3'- uGUGGGCCGacUGGG---AGC--CGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 36853 0.68 0.248618
Target:  5'- uCGCgCGGCUcGACaCCgCGGCGUCCGg -3'
miRNA:   3'- uGUGgGCCGA-CUG-GGaGCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 39472 0.68 0.248618
Target:  5'- uCGCCCaGaUGGCCg-CGGCGCCCAg -3'
miRNA:   3'- uGUGGGcCgACUGGgaGCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 22872 0.68 0.231078
Target:  5'- gGCGCCCGGCUG-CCgacaUCGGcCGCUgAc -3'
miRNA:   3'- -UGUGGGCCGACuGGg---AGCC-GCGGgUa -5'
19284 5' -64.3 NC_004685.1 + 44003 0.68 0.219973
Target:  5'- -aGCCUGGaggaaACCCUCGGCGCCg-- -3'
miRNA:   3'- ugUGGGCCgac--UGGGAGCCGCGGgua -5'
19284 5' -64.3 NC_004685.1 + 39965 0.69 0.209326
Target:  5'- cGCACCuCGGgccagaccCUGACCCU-GGCGCaCCGg -3'
miRNA:   3'- -UGUGG-GCC--------GACUGGGAgCCGCG-GGUa -5'
19284 5' -64.3 NC_004685.1 + 33655 0.69 0.204171
Target:  5'- gGCAUCCGGCUgcGACUCaaGGCGUUCAg -3'
miRNA:   3'- -UGUGGGCCGA--CUGGGagCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 59610 0.69 0.194191
Target:  5'- cGCGCCCGGC-GAaUCUCGGCGaCCGc -3'
miRNA:   3'- -UGUGGGCCGaCUgGGAGCCGCgGGUa -5'
19284 5' -64.3 NC_004685.1 + 37007 0.69 0.189363
Target:  5'- aAguCCUGGCUGGCCCcgCGGuUGUCCAg -3'
miRNA:   3'- -UguGGGCCGACUGGGa-GCC-GCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 63243 0.7 0.168492
Target:  5'- -uGCCgGGCUGuucgggccaggugauGCCCUUGGCGCCg-- -3'
miRNA:   3'- ugUGGgCCGAC---------------UGGGAGCCGCGGgua -5'
19284 5' -64.3 NC_004685.1 + 44250 0.7 0.166778
Target:  5'- -aGCCCGGCccGAUCUU-GGCGCCCGa -3'
miRNA:   3'- ugUGGGCCGa-CUGGGAgCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 61186 0.71 0.154414
Target:  5'- cCAUCCGGUagcgGACCCcacCGGCGCUCAg -3'
miRNA:   3'- uGUGGGCCGa---CUGGGa--GCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 19352 0.71 0.146639
Target:  5'- uGCGCCgCGGCgaagucGGCCC-CGGCaGCCCGc -3'
miRNA:   3'- -UGUGG-GCCGa-----CUGGGaGCCG-CGGGUa -5'
19284 5' -64.3 NC_004685.1 + 3427 0.71 0.141411
Target:  5'- aACACCCugcGGCUGACCCgcugcgaucguugCGGCGCggcagCCAa -3'
miRNA:   3'- -UGUGGG---CCGACUGGGa------------GCCGCG-----GGUa -5'
19284 5' -64.3 NC_004685.1 + 48154 0.71 0.139222
Target:  5'- cAC-CCCGGCUGGCCCgaugUGGCccgGCUCGUc -3'
miRNA:   3'- -UGuGGGCCGACUGGGa---GCCG---CGGGUA- -5'
19284 5' -64.3 NC_004685.1 + 58969 0.72 0.125413
Target:  5'- cGCACcaCCGGCcaguuCCaCUCGGCGCCCAa -3'
miRNA:   3'- -UGUG--GGCCGacu--GG-GAGCCGCGGGUa -5'
19284 5' -64.3 NC_004685.1 + 60706 1.04 0.000402
Target:  5'- cACACCCGGCUGACCCUCGGCGCCCAUc -3'
miRNA:   3'- -UGUGGGCCGACUGGGAGCCGCGGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.