miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19286 3' -61.4 NC_004685.1 + 452 0.66 0.414498
Target:  5'- -uGGCGcGCCCCuuacccguGGCCGC-CACCaugucGGAg -3'
miRNA:   3'- auCCGCuUGGGG--------UCGGCGaGUGG-----CCU- -5'
19286 3' -61.4 NC_004685.1 + 25887 0.66 0.413605
Target:  5'- gGGGCGGccgacgcugaucgACUCCGGCUuCUCGuuGGAg -3'
miRNA:   3'- aUCCGCU-------------UGGGGUCGGcGAGUggCCU- -5'
19286 3' -61.4 NC_004685.1 + 17680 0.67 0.405618
Target:  5'- gAGGCucACCCCgAGCaCGUgcugUCugCGGAg -3'
miRNA:   3'- aUCCGcuUGGGG-UCG-GCG----AGugGCCU- -5'
19286 3' -61.4 NC_004685.1 + 69549 0.67 0.396859
Target:  5'- -cGGCc-ACCCCggcAGCCGCgcccgCGCCGGu -3'
miRNA:   3'- auCCGcuUGGGG---UCGGCGa----GUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 51009 0.67 0.39599
Target:  5'- aAGGUGGugcgGCCCCAGCCcugaucuGCgUCaggACCGGGg -3'
miRNA:   3'- aUCCGCU----UGGGGUCGG-------CG-AG---UGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 28933 0.67 0.371325
Target:  5'- cUGGGCGGcggcaACCUUGGCgCGCUCACCc-- -3'
miRNA:   3'- -AUCCGCU-----UGGGGUCG-GCGAGUGGccu -5'
19286 3' -61.4 NC_004685.1 + 39031 0.67 0.371325
Target:  5'- cGGGCGuggacuGCCaauCGGCCgGgUCACCGGGa -3'
miRNA:   3'- aUCCGCu-----UGGg--GUCGG-CgAGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 12622 0.67 0.363066
Target:  5'- aAGGcCGGGCaggaaaucgaCCGGCUGCUCgccGCCGGGc -3'
miRNA:   3'- aUCC-GCUUGg---------GGUCGGCGAG---UGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 14144 0.67 0.359798
Target:  5'- cUGGGCGAGCCCgaccgggugaagggCAuucagauGCUGCUCgacGCCGGGc -3'
miRNA:   3'- -AUCCGCUUGGG--------------GU-------CGGCGAG---UGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 24525 0.68 0.358172
Target:  5'- cUGGGUGAccaACCCCgAGCCGaacgagggcuuccacCUCAUCGGu -3'
miRNA:   3'- -AUCCGCU---UGGGG-UCGGC---------------GAGUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 61620 0.68 0.34614
Target:  5'- gUGGGCGAAcagcucaaucugcCCCCAGCUG-UCGCgGGu -3'
miRNA:   3'- -AUCCGCUU-------------GGGGUCGGCgAGUGgCCu -5'
19286 3' -61.4 NC_004685.1 + 52299 0.68 0.316231
Target:  5'- cAGGUaGAugguCCCCAGCCGgaCGCCGu- -3'
miRNA:   3'- aUCCG-CUu---GGGGUCGGCgaGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 26219 0.69 0.308883
Target:  5'- --cGCGAugUCCAGCCaGaugUCGCCGGAc -3'
miRNA:   3'- aucCGCUugGGGUCGG-Cg--AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 40227 0.69 0.301666
Target:  5'- -uGGCGGGCUCCAGCU----GCCGGAa -3'
miRNA:   3'- auCCGCUUGGGGUCGGcgagUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 27833 0.69 0.287623
Target:  5'- cGGcGCGGAacaCCCGGCCGCcgugCACCacGGAg -3'
miRNA:   3'- aUC-CGCUUg--GGGUCGGCGa---GUGG--CCU- -5'
19286 3' -61.4 NC_004685.1 + 35106 0.69 0.287623
Target:  5'- cAGGCGcucggcAGCgUCGGCCGCggUCAUCGGAu -3'
miRNA:   3'- aUCCGC------UUGgGGUCGGCG--AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 55669 0.69 0.280797
Target:  5'- -uGGCGAACUCgA-CCGCcucgUCGCCGGAa -3'
miRNA:   3'- auCCGCUUGGGgUcGGCG----AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 51840 0.69 0.280797
Target:  5'- -cGGUGAGCaCCAGCauccCGCUCACCGa- -3'
miRNA:   3'- auCCGCUUGgGGUCG----GCGAGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 6462 0.69 0.280121
Target:  5'- -cGGC--ACCCCuggcGGCCGCaacggagUCACCGGAa -3'
miRNA:   3'- auCCGcuUGGGG----UCGGCG-------AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 17813 0.69 0.2741
Target:  5'- gAGGCGGGCa--AGCUGCUgGCCGGc -3'
miRNA:   3'- aUCCGCUUGgggUCGGCGAgUGGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.