miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19286 5' -54.3 NC_004685.1 + 59942 1.13 0.000981
Target:  5'- uGCCGCAACACCGUCAUGGUGGUCUGCc -3'
miRNA:   3'- -CGGCGUUGUGGCAGUACCACCAGACG- -5'
19286 5' -54.3 NC_004685.1 + 2589 0.78 0.240964
Target:  5'- cGUCGCAACgacaGCC-UCGaGGUGGUCUGCc -3'
miRNA:   3'- -CGGCGUUG----UGGcAGUaCCACCAGACG- -5'
19286 5' -54.3 NC_004685.1 + 49850 0.76 0.280451
Target:  5'- aGCCGCc-CACCGUCAUGGuUGGgg-GCc -3'
miRNA:   3'- -CGGCGuuGUGGCAGUACC-ACCagaCG- -5'
19286 5' -54.3 NC_004685.1 + 8187 0.75 0.32491
Target:  5'- cGUCGCGACGCCG-CcgGGcGGUCgGCc -3'
miRNA:   3'- -CGGCGUUGUGGCaGuaCCaCCAGaCG- -5'
19286 5' -54.3 NC_004685.1 + 46200 0.75 0.35735
Target:  5'- uGUCGUGACGCuCGUCuuuGUGGUGGccCUGCu -3'
miRNA:   3'- -CGGCGUUGUG-GCAG---UACCACCa-GACG- -5'
19286 5' -54.3 NC_004685.1 + 37920 0.73 0.438257
Target:  5'- uGCCGCGuGCA-CGUCGUaGGUGcUCUGCg -3'
miRNA:   3'- -CGGCGU-UGUgGCAGUA-CCACcAGACG- -5'
19286 5' -54.3 NC_004685.1 + 27238 0.73 0.438257
Target:  5'- cGCCGCcaAGgGCUGUCGUGGgcGGUCaGCc -3'
miRNA:   3'- -CGGCG--UUgUGGCAGUACCa-CCAGaCG- -5'
19286 5' -54.3 NC_004685.1 + 42678 0.73 0.445946
Target:  5'- aGCCGCuacggucguguCGCCGUCGgcaggcagcgccUGGUGGUCUuucGCc -3'
miRNA:   3'- -CGGCGuu---------GUGGCAGU------------ACCACCAGA---CG- -5'
19286 5' -54.3 NC_004685.1 + 10377 0.72 0.507909
Target:  5'- cCCGCGACGCCGcCAUcgacgccgcGGUGGgcCUGUc -3'
miRNA:   3'- cGGCGUUGUGGCaGUA---------CCACCa-GACG- -5'
19286 5' -54.3 NC_004685.1 + 16608 0.71 0.52868
Target:  5'- aCCGCGACgacuacacccgGCCGUCGcUGGUGGagCgUGCa -3'
miRNA:   3'- cGGCGUUG-----------UGGCAGU-ACCACCa-G-ACG- -5'
19286 5' -54.3 NC_004685.1 + 28529 0.71 0.539183
Target:  5'- gGCCGCGAgaaGCaCGaCGUGGUGGUCa-- -3'
miRNA:   3'- -CGGCGUUg--UG-GCaGUACCACCAGacg -5'
19286 5' -54.3 NC_004685.1 + 30326 0.71 0.549756
Target:  5'- uGCCGUuucCGCCGag--GGUGGUCUGg -3'
miRNA:   3'- -CGGCGuu-GUGGCaguaCCACCAGACg -5'
19286 5' -54.3 NC_004685.1 + 9800 0.71 0.560393
Target:  5'- aCCGCGGcCGCCGcggCGaGGUGGUCccgGCg -3'
miRNA:   3'- cGGCGUU-GUGGCa--GUaCCACCAGa--CG- -5'
19286 5' -54.3 NC_004685.1 + 19442 0.71 0.571085
Target:  5'- cGCCG-AACGCCGUgCGUGGcGcGUCgGCg -3'
miRNA:   3'- -CGGCgUUGUGGCA-GUACCaC-CAGaCG- -5'
19286 5' -54.3 NC_004685.1 + 60387 0.7 0.614261
Target:  5'- cGCCGC--CGCUGUUAggcucgGGUGGccCUGCa -3'
miRNA:   3'- -CGGCGuuGUGGCAGUa-----CCACCa-GACG- -5'
19286 5' -54.3 NC_004685.1 + 21226 0.7 0.614261
Target:  5'- cGCCGuCGGCGCUGgaccUGGUGGUCa-- -3'
miRNA:   3'- -CGGC-GUUGUGGCagu-ACCACCAGacg -5'
19286 5' -54.3 NC_004685.1 + 34188 0.69 0.640317
Target:  5'- uCCGUGGCACCGUCgccucagcagcugaaGUGGUGGcaggagGCg -3'
miRNA:   3'- cGGCGUUGUGGCAG---------------UACCACCaga---CG- -5'
19286 5' -54.3 NC_004685.1 + 5173 0.69 0.690022
Target:  5'- cGCCGCGGCuggAUUGUCGgcugGGUGGUgUcccGCa -3'
miRNA:   3'- -CGGCGUUG---UGGCAGUa---CCACCAgA---CG- -5'
19286 5' -54.3 NC_004685.1 + 47911 0.68 0.700711
Target:  5'- aCUGCGACcagcucACCGUUgcgauUGGUguaGGUCUGCa -3'
miRNA:   3'- cGGCGUUG------UGGCAGu----ACCA---CCAGACG- -5'
19286 5' -54.3 NC_004685.1 + 45158 0.68 0.700711
Target:  5'- -aUGCGggacACGCCGUCGUGGUGG-Cg-- -3'
miRNA:   3'- cgGCGU----UGUGGCAGUACCACCaGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.