miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19287 3' -63.6 NC_004685.1 + 37146 0.66 0.400261
Target:  5'- cCGGCguGGCCgGGCCGacGCCGggaaGGUUCg -3'
miRNA:   3'- -GCCGguCUGG-CCGGU--CGGCgg--UCAGG- -5'
19287 3' -63.6 NC_004685.1 + 36548 0.66 0.400261
Target:  5'- gGGCCuGcacACCGGCgcgccCGGCgaCGCgGGUCCg -3'
miRNA:   3'- gCCGGuC---UGGCCG-----GUCG--GCGgUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 5491 0.66 0.39941
Target:  5'- uGGCC-GACaugguggCGGCCAucGCCGCCgAGcggCCg -3'
miRNA:   3'- gCCGGuCUG-------GCCGGU--CGGCGG-UCa--GG- -5'
19287 3' -63.6 NC_004685.1 + 10082 0.66 0.391797
Target:  5'- gGGCCGuGGCUGGaaGGCgcaGCCGGUgCg -3'
miRNA:   3'- gCCGGU-CUGGCCggUCGg--CGGUCAgG- -5'
19287 3' -63.6 NC_004685.1 + 26875 0.66 0.391797
Target:  5'- gGGC--GACCuGGCCGGgaGCCagGGUCCa -3'
miRNA:   3'- gCCGguCUGG-CCGGUCggCGG--UCAGG- -5'
19287 3' -63.6 NC_004685.1 + 6527 0.66 0.390957
Target:  5'- uGGUCgacaucaAGACCGGCCAGCCcaccgacaaGCagcaGGUgCg -3'
miRNA:   3'- gCCGG-------UCUGGCCGGUCGG---------CGg---UCAgG- -5'
19287 3' -63.6 NC_004685.1 + 39418 0.66 0.389281
Target:  5'- aGGUCGGcGCCGcGCCAggaggcagauccuuGCCG-UAGUCCg -3'
miRNA:   3'- gCCGGUC-UGGC-CGGU--------------CGGCgGUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 1217 0.66 0.38345
Target:  5'- gGGCCgcaucGGACUGG-CGGCCGCCcaUCg -3'
miRNA:   3'- gCCGG-----UCUGGCCgGUCGGCGGucAGg -5'
19287 3' -63.6 NC_004685.1 + 3938 0.66 0.38345
Target:  5'- gCGGCCuGGACCcucagcGGCUcaGGCUcggGCgCGGUCCa -3'
miRNA:   3'- -GCCGG-UCUGG------CCGG--UCGG---CG-GUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 37207 0.66 0.375222
Target:  5'- -uGCCAGGuuGGgCAG-CGCCGGggCCg -3'
miRNA:   3'- gcCGGUCUggCCgGUCgGCGGUCa-GG- -5'
19287 3' -63.6 NC_004685.1 + 9717 0.66 0.375222
Target:  5'- gGGCgCGguGACCGGCCGuGCCgGgCAGaCCa -3'
miRNA:   3'- gCCG-GU--CUGGCCGGU-CGG-CgGUCaGG- -5'
19287 3' -63.6 NC_004685.1 + 16128 0.66 0.375222
Target:  5'- aCGGCCacgguccccuGGAgUCGGCCGcGCCGCgccaGGUCg -3'
miRNA:   3'- -GCCGG----------UCU-GGCCGGU-CGGCGg---UCAGg -5'
19287 3' -63.6 NC_004685.1 + 36994 0.66 0.372777
Target:  5'- gGGCCAGGa-GGCCGucaucuaccugcguGCggagCGUCAGUCCg -3'
miRNA:   3'- gCCGGUCUggCCGGU--------------CG----GCGGUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 63241 0.66 0.369534
Target:  5'- gGuGCCGGGCUguucgGGCCAggugaugcccuuggcGCCGCCGGagaagaaUCCg -3'
miRNA:   3'- gC-CGGUCUGG-----CCGGU---------------CGGCGGUC-------AGG- -5'
19287 3' -63.6 NC_004685.1 + 41704 0.66 0.367115
Target:  5'- aCGGCgCGGAgcuuguucUUGGCCucguucAGCCGCuCAGUCg -3'
miRNA:   3'- -GCCG-GUCU--------GGCCGG------UCGGCG-GUCAGg -5'
19287 3' -63.6 NC_004685.1 + 35405 0.66 0.359129
Target:  5'- cCGGCCcGACCGGCaCGGUgaucgacuCGgCGGUgCg -3'
miRNA:   3'- -GCCGGuCUGGCCG-GUCG--------GCgGUCAgG- -5'
19287 3' -63.6 NC_004685.1 + 28890 0.66 0.359129
Target:  5'- aGGCgCuGACCGGCC-GCCGgaaCCAGg-- -3'
miRNA:   3'- gCCG-GuCUGGCCGGuCGGC---GGUCagg -5'
19287 3' -63.6 NC_004685.1 + 30132 0.66 0.359129
Target:  5'- gCGGCCGcACuCGGCCcggcAGCC-CCGG-CCa -3'
miRNA:   3'- -GCCGGUcUG-GCCGG----UCGGcGGUCaGG- -5'
19287 3' -63.6 NC_004685.1 + 66259 0.66 0.359129
Target:  5'- gCGGCCcgugcaaucagGGcAUCGGCCgcuGGUCGCCggaagcgcuGGUCCg -3'
miRNA:   3'- -GCCGG-----------UC-UGGCCGG---UCGGCGG---------UCAGG- -5'
19287 3' -63.6 NC_004685.1 + 53709 0.66 0.359129
Target:  5'- gCGGaaCCGGAUgGGgUAGCCGUCGGagCCg -3'
miRNA:   3'- -GCC--GGUCUGgCCgGUCGGCGGUCa-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.