miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19287 3' -63.6 NC_004685.1 + 59469 1.1 0.000191
Target:  5'- gCGGCCAGACCGGCCAGCCGCCAGUCCu -3'
miRNA:   3'- -GCCGGUCUGGCCGGUCGGCGGUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 68455 0.79 0.047011
Target:  5'- -cGCCAGuCCgauGGgCGGCCGCCAGUCCg -3'
miRNA:   3'- gcCGGUCuGG---CCgGUCGGCGGUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 68486 0.76 0.076342
Target:  5'- gCGGCCcccuGGCCccGCCaguccgaugcggGGCCGCCAGUCCg -3'
miRNA:   3'- -GCCGGu---CUGGc-CGG------------UCGGCGGUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 24580 0.75 0.091962
Target:  5'- aGGCUGGccAUCGGUgAGCCGCCguAGUCCg -3'
miRNA:   3'- gCCGGUC--UGGCCGgUCGGCGG--UCAGG- -5'
19287 3' -63.6 NC_004685.1 + 11366 0.74 0.104929
Target:  5'- aGGCUguGCCGGCCgGGCCGaCCaaGGUCCg -3'
miRNA:   3'- gCCGGucUGGCCGG-UCGGC-GG--UCAGG- -5'
19287 3' -63.6 NC_004685.1 + 18557 0.74 0.104929
Target:  5'- uGGCCGGAUCGGCgGGCaacagGCCGGUg- -3'
miRNA:   3'- gCCGGUCUGGCCGgUCGg----CGGUCAgg -5'
19287 3' -63.6 NC_004685.1 + 59436 0.74 0.113515
Target:  5'- aCGGUCGGGCagCGGCCAGUCGaugaCGGUCa -3'
miRNA:   3'- -GCCGGUCUG--GCCGGUCGGCg---GUCAGg -5'
19287 3' -63.6 NC_004685.1 + 2235 0.74 0.116521
Target:  5'- gGuGCCAGACCuGCCuGCCGcCCGG-CCg -3'
miRNA:   3'- gC-CGGUCUGGcCGGuCGGC-GGUCaGG- -5'
19287 3' -63.6 NC_004685.1 + 10220 0.73 0.1196
Target:  5'- gCGGCU-GGCCGGUCuGGCCGCCGGggugUCg -3'
miRNA:   3'- -GCCGGuCUGGCCGG-UCGGCGGUCa---GG- -5'
19287 3' -63.6 NC_004685.1 + 34292 0.73 0.125987
Target:  5'- cCGGUCGGGCCGGUgAuCCGCgagCGGUCCu -3'
miRNA:   3'- -GCCGGUCUGGCCGgUcGGCG---GUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 56361 0.73 0.129298
Target:  5'- uCGGCCAcGCgGGCCAGCUcaGCCAGcuugaCCa -3'
miRNA:   3'- -GCCGGUcUGgCCGGUCGG--CGGUCa----GG- -5'
19287 3' -63.6 NC_004685.1 + 3241 0.73 0.129298
Target:  5'- gGGUCGGGCCGGaCCAucGgCGCCGGUUUg -3'
miRNA:   3'- gCCGGUCUGGCC-GGU--CgGCGGUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 64918 0.73 0.132689
Target:  5'- gGGCaCAGuauCCGGCCAGCgCGCCGa-CCa -3'
miRNA:   3'- gCCG-GUCu--GGCCGGUCG-GCGGUcaGG- -5'
19287 3' -63.6 NC_004685.1 + 58323 0.73 0.132689
Target:  5'- uCGGCCcGGCCGGCaCAGCCucggugucgggGCgGGUCg -3'
miRNA:   3'- -GCCGGuCUGGCCG-GUCGG-----------CGgUCAGg -5'
19287 3' -63.6 NC_004685.1 + 37088 0.72 0.139718
Target:  5'- gGGCCGGuGCCGGUguGCUGCgugCGGUUCg -3'
miRNA:   3'- gCCGGUC-UGGCCGguCGGCG---GUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 44693 0.72 0.147087
Target:  5'- gCGGCCccccGGGCCGGacacCCGGCCGCU-GUUCa -3'
miRNA:   3'- -GCCGG----UCUGGCC----GGUCGGCGGuCAGG- -5'
19287 3' -63.6 NC_004685.1 + 29158 0.72 0.150903
Target:  5'- gCGGUCGGAuagccgaacaguCCGGCCAGgaaCGCCAGcgggCCg -3'
miRNA:   3'- -GCCGGUCU------------GGCCGGUCg--GCGGUCa---GG- -5'
19287 3' -63.6 NC_004685.1 + 32878 0.72 0.153628
Target:  5'- gGGCCGGuGCCGgugaugacgcaccaGCCcugcggcucgGGCCGCCAGUCg -3'
miRNA:   3'- gCCGGUC-UGGC--------------CGG----------UCGGCGGUCAGg -5'
19287 3' -63.6 NC_004685.1 + 29021 0.72 0.154809
Target:  5'- uGGCCaacGGugCGGUC-GCCGCgucgCAGUCCa -3'
miRNA:   3'- gCCGG---UCugGCCGGuCGGCG----GUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 24988 0.72 0.158806
Target:  5'- gCGGCCGGGuguCCGGCCcggggGGCCGCUccagguAGcCCa -3'
miRNA:   3'- -GCCGGUCU---GGCCGG-----UCGGCGG------UCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.