miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19287 3' -63.6 NC_004685.1 + 30132 0.66 0.359129
Target:  5'- gCGGCCGcACuCGGCCcggcAGCC-CCGG-CCa -3'
miRNA:   3'- -GCCGGUcUG-GCCGG----UCGGcGGUCaGG- -5'
19287 3' -63.6 NC_004685.1 + 64435 0.66 0.351264
Target:  5'- -uGCCAGcguCUGGgCGGCCGCCAuuGcCCg -3'
miRNA:   3'- gcCGGUCu--GGCCgGUCGGCGGU--CaGG- -5'
19287 3' -63.6 NC_004685.1 + 42563 0.66 0.351264
Target:  5'- -cGCCAGAgCCGGCCAuCaGCCcacGUCCu -3'
miRNA:   3'- gcCGGUCU-GGCCGGUcGgCGGu--CAGG- -5'
19287 3' -63.6 NC_004685.1 + 31363 0.66 0.351264
Target:  5'- -cGCgCAGAUCGGCCAgGCCcgcGCCuucaccGUCCu -3'
miRNA:   3'- gcCG-GUCUGGCCGGU-CGG---CGGu-----CAGG- -5'
19287 3' -63.6 NC_004685.1 + 55323 0.66 0.351264
Target:  5'- gCGGCCAG--CGGCCcGCaucaGCCGcUCCa -3'
miRNA:   3'- -GCCGGUCugGCCGGuCGg---CGGUcAGG- -5'
19287 3' -63.6 NC_004685.1 + 32246 0.67 0.343524
Target:  5'- cCGcGCUGaacgcGGCCGcGUCGGCCGCCGGUg- -3'
miRNA:   3'- -GC-CGGU-----CUGGC-CGGUCGGCGGUCAgg -5'
19287 3' -63.6 NC_004685.1 + 29731 0.67 0.335906
Target:  5'- uGGCCcgaGGugCGGUC-GCCGCCGuaugCCu -3'
miRNA:   3'- gCCGG---UCugGCCGGuCGGCGGUca--GG- -5'
19287 3' -63.6 NC_004685.1 + 54912 0.67 0.335906
Target:  5'- gCGGCCAcgUCGGCUuggcugAGCCGCUGGUa- -3'
miRNA:   3'- -GCCGGUcuGGCCGG------UCGGCGGUCAgg -5'
19287 3' -63.6 NC_004685.1 + 64267 0.67 0.335151
Target:  5'- uGGCCAGGCuguccuccuCGGCCAGCUucaccaccgugguGUCGGUg- -3'
miRNA:   3'- gCCGGUCUG---------GCCGGUCGG-------------CGGUCAgg -5'
19287 3' -63.6 NC_004685.1 + 12803 0.67 0.328413
Target:  5'- aGGCCGagcGGCUGGCgGGCCguGCC-GUCg -3'
miRNA:   3'- gCCGGU---CUGGCCGgUCGG--CGGuCAGg -5'
19287 3' -63.6 NC_004685.1 + 53374 0.67 0.328413
Target:  5'- gCGGCgAuGCUGGCCAGCuCGUCGG-Cg -3'
miRNA:   3'- -GCCGgUcUGGCCGGUCG-GCGGUCaGg -5'
19287 3' -63.6 NC_004685.1 + 9962 0.67 0.328413
Target:  5'- aCGuGCCGGGCUGGCCGacgacGCCGUgGG-Cg -3'
miRNA:   3'- -GC-CGGUCUGGCCGGU-----CGGCGgUCaGg -5'
19287 3' -63.6 NC_004685.1 + 1890 0.67 0.328413
Target:  5'- uCGGUCAGGCCgcGGCCGuGCCcGCUgcGG-CCg -3'
miRNA:   3'- -GCCGGUCUGG--CCGGU-CGG-CGG--UCaGG- -5'
19287 3' -63.6 NC_004685.1 + 21506 0.67 0.328413
Target:  5'- gGGCUucgAGGCCGGCC-GCUucgGCCAGggcgUCa -3'
miRNA:   3'- gCCGG---UCUGGCCGGuCGG---CGGUCa---GG- -5'
19287 3' -63.6 NC_004685.1 + 1803 0.67 0.321044
Target:  5'- aCGGCCAGcgcgacGCCGGCgC-GCCGCgA-UCCc -3'
miRNA:   3'- -GCCGGUC------UGGCCG-GuCGGCGgUcAGG- -5'
19287 3' -63.6 NC_004685.1 + 37889 0.67 0.321044
Target:  5'- uCGGCgAGA-CGGUCGucguGUCGCuCGGUCCg -3'
miRNA:   3'- -GCCGgUCUgGCCGGU----CGGCG-GUCAGG- -5'
19287 3' -63.6 NC_004685.1 + 5437 0.67 0.316682
Target:  5'- uGGCCAGgguggaccuguaucuGCgGGCCGGC-GCgGGUCa -3'
miRNA:   3'- gCCGGUC---------------UGgCCGGUCGgCGgUCAGg -5'
19287 3' -63.6 NC_004685.1 + 51869 0.67 0.313799
Target:  5'- --uUCAGGCCGGCCAGCaGCUuGcCCg -3'
miRNA:   3'- gccGGUCUGGCCGGUCGgCGGuCaGG- -5'
19287 3' -63.6 NC_004685.1 + 32741 0.67 0.313799
Target:  5'- cCGaGCCGGGuggUGGaCCGGCCGCCAGg-- -3'
miRNA:   3'- -GC-CGGUCUg--GCC-GGUCGGCGGUCagg -5'
19287 3' -63.6 NC_004685.1 + 62344 0.67 0.309512
Target:  5'- cCGGCCcguuGACCGGCuCguagauggugaacccAGCCGCU--UCCa -3'
miRNA:   3'- -GCCGGu---CUGGCCG-G---------------UCGGCGGucAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.