Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19287 | 3' | -63.6 | NC_004685.1 | + | 64223 | 0.69 | 0.230786 |
Target: 5'- cCGcGCCGGAugacCCGcGCCGGcCCGCagauacaGGUCCa -3' miRNA: 3'- -GC-CGGUCU----GGC-CGGUC-GGCGg------UCAGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 56493 | 0.71 | 0.16708 |
Target: 5'- cCGGCCu-GCCGGCguGCCaucucccugcacGCCuGUCCg -3' miRNA: 3'- -GCCGGucUGGCCGguCGG------------CGGuCAGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 54452 | 0.71 | 0.173101 |
Target: 5'- uCGGCCAGGaaccgcagguacuucUCGGuCCAGCCGCCcGgcgaacgCCa -3' miRNA: 3'- -GCCGGUCU---------------GGCC-GGUCGGCGGuCa------GG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 4263 | 0.71 | 0.189476 |
Target: 5'- gCGGUCAGuGCCGGaaucccaCGGUCGCuCAGUCUc -3' miRNA: 3'- -GCCGGUC-UGGCCg------GUCGGCG-GUCAGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 45845 | 0.7 | 0.204148 |
Target: 5'- uGGCC-GACCGGCUcaccgcguuGCUGCCGGUg- -3' miRNA: 3'- gCCGGuCUGGCCGGu--------CGGCGGUCAgg -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 42655 | 0.7 | 0.214469 |
Target: 5'- gCGGCCaaggcaGGcACCGGaUCAGCCGCUacGGUCg -3' miRNA: 3'- -GCCGG------UC-UGGCC-GGUCGGCGG--UCAGg -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 66523 | 0.7 | 0.219795 |
Target: 5'- gCGGCCAcagcGCUGGCCGugUGCCAGUCg -3' miRNA: 3'- -GCCGGUc---UGGCCGGUcgGCGGUCAGg -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 12592 | 0.69 | 0.230226 |
Target: 5'- uCGGCCGGACCugaaguauguucgGGCCAaccugcgcggcGCgUGCCAG-CCg -3' miRNA: 3'- -GCCGGUCUGG-------------CCGGU-----------CG-GCGGUCaGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 6746 | 0.69 | 0.230786 |
Target: 5'- -cGCCGGAUCGGCCGggcauGUCGCC-GUCg -3' miRNA: 3'- gcCGGUCUGGCCGGU-----CGGCGGuCAGg -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 2893 | 0.72 | 0.162896 |
Target: 5'- uGGCCAgGAUCGGgcacCCGGCC-CCAGUgCCg -3' miRNA: 3'- gCCGGU-CUGGCC----GGUCGGcGGUCA-GG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 29021 | 0.72 | 0.154809 |
Target: 5'- uGGCCaacGGugCGGUC-GCCGCgucgCAGUCCa -3' miRNA: 3'- gCCGG---UCugGCCGGuCGGCG----GUCAGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 44693 | 0.72 | 0.147087 |
Target: 5'- gCGGCCccccGGGCCGGacacCCGGCCGCU-GUUCa -3' miRNA: 3'- -GCCGG----UCUGGCC----GGUCGGCGGuCAGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 68486 | 0.76 | 0.076342 |
Target: 5'- gCGGCCcccuGGCCccGCCaguccgaugcggGGCCGCCAGUCCg -3' miRNA: 3'- -GCCGGu---CUGGc-CGG------------UCGGCGGUCAGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 59436 | 0.74 | 0.113515 |
Target: 5'- aCGGUCGGGCagCGGCCAGUCGaugaCGGUCa -3' miRNA: 3'- -GCCGGUCUG--GCCGGUCGGCg---GUCAGg -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 2235 | 0.74 | 0.116521 |
Target: 5'- gGuGCCAGACCuGCCuGCCGcCCGG-CCg -3' miRNA: 3'- gC-CGGUCUGGcCGGuCGGC-GGUCaGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 10220 | 0.73 | 0.1196 |
Target: 5'- gCGGCU-GGCCGGUCuGGCCGCCGGggugUCg -3' miRNA: 3'- -GCCGGuCUGGCCGG-UCGGCGGUCa---GG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 3241 | 0.73 | 0.129298 |
Target: 5'- gGGUCGGGCCGGaCCAucGgCGCCGGUUUg -3' miRNA: 3'- gCCGGUCUGGCC-GGU--CgGCGGUCAGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 56361 | 0.73 | 0.129298 |
Target: 5'- uCGGCCAcGCgGGCCAGCUcaGCCAGcuugaCCa -3' miRNA: 3'- -GCCGGUcUGgCCGGUCGG--CGGUCa----GG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 64918 | 0.73 | 0.132689 |
Target: 5'- gGGCaCAGuauCCGGCCAGCgCGCCGa-CCa -3' miRNA: 3'- gCCG-GUCu--GGCCGGUCG-GCGGUcaGG- -5' |
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19287 | 3' | -63.6 | NC_004685.1 | + | 58323 | 0.73 | 0.132689 |
Target: 5'- uCGGCCcGGCCGGCaCAGCCucggugucgggGCgGGUCg -3' miRNA: 3'- -GCCGGuCUGGCCG-GUCGG-----------CGgUCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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