miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19287 5' -58.8 NC_004685.1 + 36888 0.67 0.515831
Target:  5'- gUCGGCCgCGGCCG-CG-GGcACGUCGGg -3'
miRNA:   3'- -AGCUGG-GCCGGUaGCuCCuUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 11125 0.67 0.515831
Target:  5'- aUCGACCUGGgCG-CGGuGGccGACGCCAc -3'
miRNA:   3'- -AGCUGGGCCgGUaGCU-CC--UUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 64272 0.67 0.514817
Target:  5'- gUCGAagaaugcCUCaGUCAUCGAGGAcCGCCGGg -3'
miRNA:   3'- -AGCU-------GGGcCGGUAGCUCCUuGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 56025 0.67 0.505729
Target:  5'- aCGACCCGGCgauGUCGgaAGGGAUGaCUAGg -3'
miRNA:   3'- aGCUGGGCCGg--UAGC--UCCUUGC-GGUU- -5'
19287 5' -58.8 NC_004685.1 + 56065 0.67 0.505729
Target:  5'- gUCGugCuCGGCCG-CGGGGAacacgaacugcgGCGUCAu -3'
miRNA:   3'- -AGCugG-GCCGGUaGCUCCU------------UGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 48172 0.67 0.495714
Target:  5'- gUGGCCCGGCuCGUCGGGcAGCaCCGu -3'
miRNA:   3'- aGCUGGGCCG-GUAGCUCcUUGcGGUu -5'
19287 5' -58.8 NC_004685.1 + 51141 0.68 0.485789
Target:  5'- cCGAUCCGGCCAUC-AGcAACGUCc- -3'
miRNA:   3'- aGCUGGGCCGGUAGcUCcUUGCGGuu -5'
19287 5' -58.8 NC_004685.1 + 14888 0.68 0.485789
Target:  5'- gCGAa--GGCCcgCGAGGAGCGCa-- -3'
miRNA:   3'- aGCUgggCCGGuaGCUCCUUGCGguu -5'
19287 5' -58.8 NC_004685.1 + 66565 0.68 0.484802
Target:  5'- gCGGCCCugcggaagcgguuGGCCcUCGGGuuGCGCCAc -3'
miRNA:   3'- aGCUGGG-------------CCGGuAGCUCcuUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 40166 0.68 0.48283
Target:  5'- cUCGGCCagagcagagaacccUGGCgAgucaggUCGAGGAACGCCu- -3'
miRNA:   3'- -AGCUGG--------------GCCGgU------AGCUCCUUGCGGuu -5'
19287 5' -58.8 NC_004685.1 + 20967 0.68 0.47596
Target:  5'- gUCGGCCCGGUCAUCGAcuucaucgacucGGccCGuCCGc -3'
miRNA:   3'- -AGCUGGGCCGGUAGCU------------CCuuGC-GGUu -5'
19287 5' -58.8 NC_004685.1 + 25871 0.68 0.47596
Target:  5'- gCGGCCCGcGCagGUCGGGGcggccGACGCUGAu -3'
miRNA:   3'- aGCUGGGC-CGg-UAGCUCC-----UUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 8135 0.68 0.47596
Target:  5'- cUGGCCCGGUuugucgacuaCAUCGucgacagccugGGGGugGCCAAa -3'
miRNA:   3'- aGCUGGGCCG----------GUAGC-----------UCCUugCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 30207 0.68 0.47596
Target:  5'- gUCGGCCugggcgccgCGGCCAUCuGGGcGACGCaCAAg -3'
miRNA:   3'- -AGCUGG---------GCCGGUAGcUCC-UUGCG-GUU- -5'
19287 5' -58.8 NC_004685.1 + 47016 0.68 0.466231
Target:  5'- cUCGACagUGGCCc-CGcGGAACGCCGAg -3'
miRNA:   3'- -AGCUGg-GCCGGuaGCuCCUUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 67928 0.68 0.466231
Target:  5'- cCGGCCCGcaccgucuGCCAUCGcccGcGGACGCCGc -3'
miRNA:   3'- aGCUGGGC--------CGGUAGCu--C-CUUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 35121 0.68 0.466231
Target:  5'- gUCGGCCgCGGUCAUC--GGAuCGCCGu -3'
miRNA:   3'- -AGCUGG-GCCGGUAGcuCCUuGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 30152 0.68 0.456605
Target:  5'- -aGcCCCGGCCAUCGcAGGuauCGCgGGa -3'
miRNA:   3'- agCuGGGCCGGUAGC-UCCuu-GCGgUU- -5'
19287 5' -58.8 NC_004685.1 + 11739 0.68 0.447087
Target:  5'- aCGGCCCGcuguGCC--CGAuGGAGCGCCGc -3'
miRNA:   3'- aGCUGGGC----CGGuaGCU-CCUUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 41802 0.68 0.447087
Target:  5'- gUCGGCCCGGuuuCCGUCGAgccGGuGCGCa-- -3'
miRNA:   3'- -AGCUGGGCC---GGUAGCU---CCuUGCGguu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.