miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19290 3' -58.6 NC_004685.1 + 53349 0.66 0.599726
Target:  5'- --cGCCUGGUugaGCGuggcaCCGCCCGUCa -3'
miRNA:   3'- cgcCGGACCA---UGCuua--GGUGGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 41198 0.66 0.599726
Target:  5'- uGCucuGCCUGGUgucGCGGAga-ACCCGCUGc -3'
miRNA:   3'- -CGc--CGGACCA---UGCUUaggUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 11363 0.66 0.599726
Target:  5'- cGCaGGgCUGGUGa----CCACUCGCCGg -3'
miRNA:   3'- -CG-CCgGACCAUgcuuaGGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 29018 0.66 0.597634
Target:  5'- aGCuGGCCaacGGUGCGGucgccgcgucgcaGUCCAucgcgcuCCUGCCGa -3'
miRNA:   3'- -CG-CCGGa--CCAUGCU-------------UAGGU-------GGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 55220 0.67 0.589279
Target:  5'- gGCGGCCaGGU-CGAAgcuggaCgACUCGCUGg -3'
miRNA:   3'- -CGCCGGaCCAuGCUUa-----GgUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 30342 0.67 0.589279
Target:  5'- gGUGGUCUGG------UCCGCgCCGCCGa -3'
miRNA:   3'- -CGCCGGACCaugcuuAGGUG-GGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 37177 0.67 0.589279
Target:  5'- cGCGcCCUGGc-CGAG-CUugCCGCCGu -3'
miRNA:   3'- -CGCcGGACCauGCUUaGGugGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 2872 0.67 0.583027
Target:  5'- uGCGGCC-GGUGCGcacggcgcuggccagGAUCgggCACCCgGCCc -3'
miRNA:   3'- -CGCCGGaCCAUGC---------------UUAG---GUGGG-CGGc -5'
19290 3' -58.6 NC_004685.1 + 3974 0.67 0.578865
Target:  5'- cGUGGCgucgCUGGUAUGAGccUUCACCaaaGCCc -3'
miRNA:   3'- -CGCCG----GACCAUGCUU--AGGUGGg--CGGc -5'
19290 3' -58.6 NC_004685.1 + 67269 0.67 0.578865
Target:  5'- gGCGGCCgcgucgucUGGcacUGCGAGaacgaCCGCgCCGCCa -3'
miRNA:   3'- -CGCCGG--------ACC---AUGCUUa----GGUG-GGCGGc -5'
19290 3' -58.6 NC_004685.1 + 11030 0.67 0.578865
Target:  5'- -aGGUgUGGU--GGAUCgACCUGCCGa -3'
miRNA:   3'- cgCCGgACCAugCUUAGgUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 23713 0.67 0.578865
Target:  5'- uUGGCCUGGacgGCGAGcgCCACUggggcuggaagaCGCCu -3'
miRNA:   3'- cGCCGGACCa--UGCUUa-GGUGG------------GCGGc -5'
19290 3' -58.6 NC_004685.1 + 16726 0.67 0.578865
Target:  5'- gGCGGCCgcGGUGCGGcuGUCCGgCgGUgGc -3'
miRNA:   3'- -CGCCGGa-CCAUGCU--UAGGUgGgCGgC- -5'
19290 3' -58.6 NC_004685.1 + 60146 0.67 0.558165
Target:  5'- cGCGGCCaGG-ACG-AUCCGCCUGa-- -3'
miRNA:   3'- -CGCCGGaCCaUGCuUAGGUGGGCggc -5'
19290 3' -58.6 NC_004685.1 + 1340 0.67 0.558165
Target:  5'- cGCGaagcccugauuGCCUGGgggaGCaGAaguugAUCCugCCGCCGg -3'
miRNA:   3'- -CGC-----------CGGACCa---UG-CU-----UAGGugGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 35308 0.67 0.547892
Target:  5'- aCGGCUUG--ACGggUCCAgCCGCa- -3'
miRNA:   3'- cGCCGGACcaUGCuuAGGUgGGCGgc -5'
19290 3' -58.6 NC_004685.1 + 20334 0.67 0.547892
Target:  5'- -gGGCCggacGGcggcgGCGAAccgCUGCCCGCCGc -3'
miRNA:   3'- cgCCGGa---CCa----UGCUUa--GGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 40404 0.67 0.547892
Target:  5'- uCGGCCUGG-ACGAGaCCGaguggCCGaCCGg -3'
miRNA:   3'- cGCCGGACCaUGCUUaGGUg----GGC-GGC- -5'
19290 3' -58.6 NC_004685.1 + 62520 0.67 0.547892
Target:  5'- aCGGCUcGGacaccGCGAuggCCACCCcGCCGa -3'
miRNA:   3'- cGCCGGaCCa----UGCUua-GGUGGG-CGGC- -5'
19290 3' -58.6 NC_004685.1 + 69232 0.67 0.537679
Target:  5'- gGCGGCCacgGGUAaGGGgcgcgCCACaauCGCCGg -3'
miRNA:   3'- -CGCCGGa--CCAUgCUUa----GGUGg--GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.