miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19290 5' -56.7 NC_004685.1 + 29774 0.66 0.657672
Target:  5'- cGuuGGGCGUgacGAuGCCgaccagCGCGCCAu -3'
miRNA:   3'- -UggCCCGCAa--CU-UGGaua---GCGCGGUu -5'
19290 5' -56.7 NC_004685.1 + 36158 0.66 0.657672
Target:  5'- uGCCGguuggugguGGUGgcGAACCcGUCGCGCUGGg -3'
miRNA:   3'- -UGGC---------CCGCaaCUUGGaUAGCGCGGUU- -5'
19290 5' -56.7 NC_004685.1 + 3689 0.66 0.656589
Target:  5'- cGCCGacggcucGGCGc-GggUgUAUCGCGCCGAg -3'
miRNA:   3'- -UGGC-------CCGCaaCuuGgAUAGCGCGGUU- -5'
19290 5' -56.7 NC_004685.1 + 19201 0.67 0.635973
Target:  5'- gGCCGGuucgugucaGCGaUGAaguuugGCCUGcgguUCGCGCCGAg -3'
miRNA:   3'- -UGGCC---------CGCaACU------UGGAU----AGCGCGGUU- -5'
19290 5' -56.7 NC_004685.1 + 4416 0.67 0.625114
Target:  5'- cGCCGcGCGgaUGAGCUUGguUCGCGUCAGg -3'
miRNA:   3'- -UGGCcCGCa-ACUUGGAU--AGCGCGGUU- -5'
19290 5' -56.7 NC_004685.1 + 9713 0.67 0.625114
Target:  5'- cGCUGGGCGcgGuGACCggcCGUGCCGGg -3'
miRNA:   3'- -UGGCCCGCaaC-UUGGauaGCGCGGUU- -5'
19290 5' -56.7 NC_004685.1 + 46529 0.67 0.61426
Target:  5'- gGCCGGuGCGaUGGuCCUGaucagaaaguUCGCGUCGAa -3'
miRNA:   3'- -UGGCC-CGCaACUuGGAU----------AGCGCGGUU- -5'
19290 5' -56.7 NC_004685.1 + 66795 0.67 0.603422
Target:  5'- gGCCGGGUGcccGAuCCUGgccaGCGCCGu -3'
miRNA:   3'- -UGGCCCGCaa-CUuGGAUag--CGCGGUu -5'
19290 5' -56.7 NC_004685.1 + 49707 0.67 0.586134
Target:  5'- cACCGGGCGcgggccUuguccagcguccagcUGAACCcGUCGgCGCCAu -3'
miRNA:   3'- -UGGCCCGC------A---------------ACUUGGaUAGC-GCGGUu -5'
19290 5' -56.7 NC_004685.1 + 35534 0.68 0.566802
Target:  5'- aGCUGGGCGUcgacuacgugGGGCCgugggcacugcugAUCGCGCCc- -3'
miRNA:   3'- -UGGCCCGCAa---------CUUGGa------------UAGCGCGGuu -5'
19290 5' -56.7 NC_004685.1 + 54359 0.68 0.549756
Target:  5'- -gUGGGUGUUGAACUUc-CGUGCCAc -3'
miRNA:   3'- ugGCCCGCAACUUGGAuaGCGCGGUu -5'
19290 5' -56.7 NC_004685.1 + 28931 0.68 0.539183
Target:  5'- cGCUGGGCGgcgGcAACCUuggCGCGCUc- -3'
miRNA:   3'- -UGGCCCGCaa-C-UUGGAua-GCGCGGuu -5'
19290 5' -56.7 NC_004685.1 + 57880 0.68 0.539183
Target:  5'- cGCCuGGCGUUGAACuCUucgaccaUGCGCCGc -3'
miRNA:   3'- -UGGcCCGCAACUUG-GAua-----GCGCGGUu -5'
19290 5' -56.7 NC_004685.1 + 18314 0.68 0.528679
Target:  5'- cGCCGGuGCaggUGGcCCUGUCGCGCa-- -3'
miRNA:   3'- -UGGCC-CGca-ACUuGGAUAGCGCGguu -5'
19290 5' -56.7 NC_004685.1 + 41528 0.68 0.528679
Target:  5'- gGCCGaGGCGUucgucgcgacUGAACgcAUCGCGUCGAc -3'
miRNA:   3'- -UGGC-CCGCA----------ACUUGgaUAGCGCGGUU- -5'
19290 5' -56.7 NC_004685.1 + 20056 0.68 0.518253
Target:  5'- aACCGGGCGUUccucGAccACCUGgcguUCGUcgGCCAGc -3'
miRNA:   3'- -UGGCCCGCAA----CU--UGGAU----AGCG--CGGUU- -5'
19290 5' -56.7 NC_004685.1 + 65912 0.68 0.518253
Target:  5'- uCUGGGCG-UGAaagcACCUGagUGCGCCGAc -3'
miRNA:   3'- uGGCCCGCaACU----UGGAUa-GCGCGGUU- -5'
19290 5' -56.7 NC_004685.1 + 25799 0.71 0.391995
Target:  5'- cGCCGGGCagcggcggUGGGCCgGUCaGCGCCGc -3'
miRNA:   3'- -UGGCCCGca------ACUUGGaUAG-CGCGGUu -5'
19290 5' -56.7 NC_004685.1 + 32744 0.71 0.383131
Target:  5'- aGCCGGGUGgUGGACCgg-C-CGCCAGg -3'
miRNA:   3'- -UGGCCCGCaACUUGGauaGcGCGGUU- -5'
19290 5' -56.7 NC_004685.1 + 39028 0.72 0.34085
Target:  5'- uGCCGGGCGUgGAcuGCCaAUCG-GCCGGg -3'
miRNA:   3'- -UGGCCCGCAaCU--UGGaUAGCgCGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.