miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19291 3' -63.1 NC_004685.1 + 2332 0.66 0.36597
Target:  5'- -aCCAGUugacGCGGCGCAcGuCGCCGAgGUu -3'
miRNA:   3'- cgGGUCG----CGUCGCGU-C-GCGGCUgCGu -5'
19291 3' -63.1 NC_004685.1 + 21293 0.66 0.36597
Target:  5'- -gCCAGCaacagcugugGUGGCGCGGCGaggCGAUGCGc -3'
miRNA:   3'- cgGGUCG----------CGUCGCGUCGCg--GCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 15009 0.66 0.36597
Target:  5'- uGCUCGGUuuGUuGCGgaGGUGCUGACGCAg -3'
miRNA:   3'- -CGGGUCG--CGuCGCg-UCGCGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 64634 0.66 0.36597
Target:  5'- gGCCCAGCGgAGCGUuuCGaCCGcccaGCGg -3'
miRNA:   3'- -CGGGUCGCgUCGCGucGC-GGCug--CGU- -5'
19291 3' -63.1 NC_004685.1 + 37317 0.66 0.363532
Target:  5'- uGCCCuGCGCGGUGaugccggccaccucuGCGCCGuacucgaugccGCGCu -3'
miRNA:   3'- -CGGGuCGCGUCGCgu-------------CGCGGC-----------UGCGu -5'
19291 3' -63.1 NC_004685.1 + 51162 0.66 0.361106
Target:  5'- uCCCGGUGUcgauaccGCGCAGCGCCucguugagguacuucGACcGCAu -3'
miRNA:   3'- cGGGUCGCGu------CGCGUCGCGG---------------CUG-CGU- -5'
19291 3' -63.1 NC_004685.1 + 36565 0.66 0.361106
Target:  5'- cGCCCGGCGa--CGCGGguccgaucaaccugGCCGACGCc -3'
miRNA:   3'- -CGGGUCGCgucGCGUCg-------------CGGCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 4470 0.66 0.357888
Target:  5'- -gUCAGCGUugcgGGUGCAuGCGCUGGCGgGg -3'
miRNA:   3'- cgGGUCGCG----UCGCGU-CGCGGCUGCgU- -5'
19291 3' -63.1 NC_004685.1 + 41399 0.66 0.357086
Target:  5'- cGCCCugguGCGUggAGCGCAggucuuccagcucGCGCCGcUGCc -3'
miRNA:   3'- -CGGGu---CGCG--UCGCGU-------------CGCGGCuGCGu -5'
19291 3' -63.1 NC_004685.1 + 57077 0.66 0.349931
Target:  5'- uGCCCGGCcuuGCGCAccuCGgCGGCGCGu -3'
miRNA:   3'- -CGGGUCGcguCGCGUc--GCgGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 37857 0.66 0.349931
Target:  5'- aGCCCuGCgGCAGCGgGaucGaCGCCGACuGCc -3'
miRNA:   3'- -CGGGuCG-CGUCGCgU---C-GCGGCUG-CGu -5'
19291 3' -63.1 NC_004685.1 + 54969 0.67 0.342102
Target:  5'- gGCuCCAGCGCAcGgGCcGCGCCGuuGg- -3'
miRNA:   3'- -CG-GGUCGCGU-CgCGuCGCGGCugCgu -5'
19291 3' -63.1 NC_004685.1 + 43055 0.67 0.342102
Target:  5'- -gUCGGUGCGGCGguGCucGCCGcggucggcuggGCGCAc -3'
miRNA:   3'- cgGGUCGCGUCGCguCG--CGGC-----------UGCGU- -5'
19291 3' -63.1 NC_004685.1 + 33307 0.67 0.3344
Target:  5'- uGCCCAGgcCGCcgucgGGCGCGGCGaCCG-CGa- -3'
miRNA:   3'- -CGGGUC--GCG-----UCGCGUCGC-GGCuGCgu -5'
19291 3' -63.1 NC_004685.1 + 31180 0.67 0.3344
Target:  5'- uGUCgaaGGCGauccGCGCGGUGCCcGGCGCGa -3'
miRNA:   3'- -CGGg--UCGCgu--CGCGUCGCGG-CUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 35429 0.67 0.3344
Target:  5'- aCUCGGCGguGCGUcaGGUGgUCGACGUg -3'
miRNA:   3'- cGGGUCGCguCGCG--UCGC-GGCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 56050 0.67 0.3344
Target:  5'- cGCCCAGCGCAcccaGUcGUGCuCGGcCGCGg -3'
miRNA:   3'- -CGGGUCGCGUcg--CGuCGCG-GCU-GCGU- -5'
19291 3' -63.1 NC_004685.1 + 25156 0.67 0.333637
Target:  5'- gGCCCAGCGCGuUGCGGgugucaggcagguUGCCcGCGUAa -3'
miRNA:   3'- -CGGGUCGCGUcGCGUC-------------GCGGcUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 1312 0.67 0.32984
Target:  5'- aCCCggGGCGCAcgcacacucggacccGCGCGGCGC--ACGCAc -3'
miRNA:   3'- cGGG--UCGCGU---------------CGCGUCGCGgcUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 68421 0.67 0.326825
Target:  5'- uGCgCCAcGCGCGcGCGUAG-GuCCGAUGCGg -3'
miRNA:   3'- -CG-GGU-CGCGU-CGCGUCgC-GGCUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.