miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19291 5' -56.4 NC_004685.1 + 11368 0.66 0.72687
Target:  5'- gCUGUGCCGGccgggccgaccaagGUCCgcGUGCUCgACCu -3'
miRNA:   3'- aGACGCGGCUua------------CGGGa-CACGAG-UGG- -5'
19291 5' -56.4 NC_004685.1 + 60401 0.66 0.725829
Target:  5'- gUCUGCGUCGcucAUGCCCc--GCUCcauCCc -3'
miRNA:   3'- -AGACGCGGCu--UACGGGacaCGAGu--GG- -5'
19291 5' -56.4 NC_004685.1 + 59169 0.66 0.715372
Target:  5'- aUCUGCG-CGAucAUGCCCUGacCgacCGCCc -3'
miRNA:   3'- -AGACGCgGCU--UACGGGACacGa--GUGG- -5'
19291 5' -56.4 NC_004685.1 + 67833 0.66 0.715372
Target:  5'- cCUG-GCCGAA-GCCgaGcUGgUCACCg -3'
miRNA:   3'- aGACgCGGCUUaCGGgaC-ACgAGUGG- -5'
19291 5' -56.4 NC_004685.1 + 60259 0.66 0.704836
Target:  5'- aCgGCGCCGGucgGCCCgcauggGUGauggucuUCGCCa -3'
miRNA:   3'- aGaCGCGGCUua-CGGGa-----CACg------AGUGG- -5'
19291 5' -56.4 NC_004685.1 + 12446 0.66 0.694232
Target:  5'- --cGcCGCCGAGcGCCCgGUcaGCUgACCa -3'
miRNA:   3'- agaC-GCGGCUUaCGGGaCA--CGAgUGG- -5'
19291 5' -56.4 NC_004685.1 + 61616 0.66 0.694232
Target:  5'- -aUGCGCCGGAUgcagcgcauacGCCUUGUccaGCUCcgACUg -3'
miRNA:   3'- agACGCGGCUUA-----------CGGGACA---CGAG--UGG- -5'
19291 5' -56.4 NC_004685.1 + 9823 0.66 0.68357
Target:  5'- gCUGCGCCGggUucuggaucaucaGCCgaGacgagGCgcgCACCg -3'
miRNA:   3'- aGACGCGGCuuA------------CGGgaCa----CGa--GUGG- -5'
19291 5' -56.4 NC_004685.1 + 67302 0.66 0.68357
Target:  5'- --cGCGCCGccaaGCUC-GUGCUgGCCg -3'
miRNA:   3'- agaCGCGGCuua-CGGGaCACGAgUGG- -5'
19291 5' -56.4 NC_004685.1 + 2228 0.67 0.672861
Target:  5'- --gGUGCCGggUGCcagaCCUGccUGC-CGCCc -3'
miRNA:   3'- agaCGCGGCuuACG----GGAC--ACGaGUGG- -5'
19291 5' -56.4 NC_004685.1 + 37542 0.67 0.672861
Target:  5'- cCUGCGUCGGcacGCCCagcgGUGUcggugCGCCa -3'
miRNA:   3'- aGACGCGGCUua-CGGGa---CACGa----GUGG- -5'
19291 5' -56.4 NC_004685.1 + 33414 0.67 0.662114
Target:  5'- --cGCGCCGcAGcGCaCCggccUGCUCGCCg -3'
miRNA:   3'- agaCGCGGC-UUaCG-GGac--ACGAGUGG- -5'
19291 5' -56.4 NC_004685.1 + 36041 0.67 0.662114
Target:  5'- --cGCaGCCGGAUGCC--GUuCUCACCg -3'
miRNA:   3'- agaCG-CGGCUUACGGgaCAcGAGUGG- -5'
19291 5' -56.4 NC_004685.1 + 18964 0.67 0.651341
Target:  5'- --cGCGCCGuugcgGUCCUGU--UCGCCa -3'
miRNA:   3'- agaCGCGGCuua--CGGGACAcgAGUGG- -5'
19291 5' -56.4 NC_004685.1 + 10341 0.67 0.651341
Target:  5'- --aGCGCCGAGUGCUCaGccUGCUgaagaagggcaaCACCc -3'
miRNA:   3'- agaCGCGGCUUACGGGaC--ACGA------------GUGG- -5'
19291 5' -56.4 NC_004685.1 + 68360 0.67 0.651341
Target:  5'- -gUGCGCCGcgcggGUCCgagUGUGCgugCGCCc -3'
miRNA:   3'- agACGCGGCuua--CGGG---ACACGa--GUGG- -5'
19291 5' -56.4 NC_004685.1 + 43033 0.67 0.648106
Target:  5'- --cGCGCuCGGcugugguGUGCUCgucggugcggcgGUGCUCGCCg -3'
miRNA:   3'- agaCGCG-GCU-------UACGGGa-----------CACGAGUGG- -5'
19291 5' -56.4 NC_004685.1 + 4386 0.67 0.629754
Target:  5'- uUCcGCGCCGccaGCCUUGUagUCGCCg -3'
miRNA:   3'- -AGaCGCGGCuuaCGGGACAcgAGUGG- -5'
19291 5' -56.4 NC_004685.1 + 62067 0.67 0.629754
Target:  5'- -aUGCGCuCGAugguUGCCagcaUGUGUuccaUCGCCa -3'
miRNA:   3'- agACGCG-GCUu---ACGGg---ACACG----AGUGG- -5'
19291 5' -56.4 NC_004685.1 + 40042 0.67 0.618958
Target:  5'- --cGCGCCGAcaGCCUUGaggGCUUcCCa -3'
miRNA:   3'- agaCGCGGCUuaCGGGACa--CGAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.