miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19292 3' -57.7 NC_004685.1 + 1087 0.66 0.652006
Target:  5'- aGACcauUGGGC-CGGCCGGCuGGUg- -3'
miRNA:   3'- aCUGuc-ACUCGuGCCGGUCGcCCAac -5'
19292 3' -57.7 NC_004685.1 + 46641 0.66 0.650933
Target:  5'- aUGGCGGgcgcgGcgcuGUACGGCCuguuuguGGCGGGUg- -3'
miRNA:   3'- -ACUGUCa----Cu---CGUGCCGG-------UCGCCCAac -5'
19292 3' -57.7 NC_004685.1 + 116 0.66 0.634812
Target:  5'- aGGCGGUagcggcgaccggcgcGGGCGCGGCUGcCGGGgUGg -3'
miRNA:   3'- aCUGUCA---------------CUCGUGCCGGUcGCCCaAC- -5'
19292 3' -57.7 NC_004685.1 + 2981 0.66 0.634812
Target:  5'- --cCAGauGGCGCGGUcgucggcgugcgccaCAGCGGGUUGa -3'
miRNA:   3'- acuGUCacUCGUGCCG---------------GUCGCCCAAC- -5'
19292 3' -57.7 NC_004685.1 + 27544 0.66 0.609021
Target:  5'- aGGCGGU---CAUGGCCgcAGCGGGUUc -3'
miRNA:   3'- aCUGUCAcucGUGCCGG--UCGCCCAAc -5'
19292 3' -57.7 NC_004685.1 + 35278 0.66 0.609021
Target:  5'- gUGACGGUGAGCGUGGaCCuGUGGc--- -3'
miRNA:   3'- -ACUGUCACUCGUGCC-GGuCGCCcaac -5'
19292 3' -57.7 NC_004685.1 + 952 0.66 0.602586
Target:  5'- gGGCGGaugcgGGGCACGGUCAggucuccuuggugucGUGGGUg- -3'
miRNA:   3'- aCUGUCa----CUCGUGCCGGU---------------CGCCCAac -5'
19292 3' -57.7 NC_004685.1 + 40627 0.66 0.598301
Target:  5'- -aGCGGUcAGCACGGUCGGCaGGa-- -3'
miRNA:   3'- acUGUCAcUCGUGCCGGUCGcCCaac -5'
19292 3' -57.7 NC_004685.1 + 8679 0.66 0.59723
Target:  5'- cGACGauGUGcaucgccGGCACGGCCuGCGuGGUc- -3'
miRNA:   3'- aCUGU--CAC-------UCGUGCCGGuCGC-CCAac -5'
19292 3' -57.7 NC_004685.1 + 59478 0.67 0.576949
Target:  5'- gGACAGcucGgGCGG-CGGCGGGUUGc -3'
miRNA:   3'- aCUGUCacuCgUGCCgGUCGCCCAAC- -5'
19292 3' -57.7 NC_004685.1 + 67792 0.68 0.514166
Target:  5'- -cGCAGcGGGCACGGCC-GCGGccUGa -3'
miRNA:   3'- acUGUCaCUCGUGCCGGuCGCCcaAC- -5'
19292 3' -57.7 NC_004685.1 + 34721 0.68 0.493838
Target:  5'- aUGGC-GUGGgagaacggcuGCGCGGCCAGCGGc--- -3'
miRNA:   3'- -ACUGuCACU----------CGUGCCGGUCGCCcaac -5'
19292 3' -57.7 NC_004685.1 + 25743 0.68 0.493838
Target:  5'- gGACAGcaccGAGC-CGGUCAGCGGa--- -3'
miRNA:   3'- aCUGUCa---CUCGuGCCGGUCGCCcaac -5'
19292 3' -57.7 NC_004685.1 + 25809 0.71 0.323453
Target:  5'- cGGCGGUGGGC-CGGUCAGCGccgcGGg-- -3'
miRNA:   3'- aCUGUCACUCGuGCCGGUCGC----CCaac -5'
19292 3' -57.7 NC_004685.1 + 11611 0.72 0.279564
Target:  5'- gGGCGGcgugGAGCGCaGCCGGUGGGa-- -3'
miRNA:   3'- aCUGUCa---CUCGUGcCGGUCGCCCaac -5'
19292 3' -57.7 NC_004685.1 + 7471 0.75 0.19064
Target:  5'- cGACGGUGcAGCACGGCUcguccauGUGGGUg- -3'
miRNA:   3'- aCUGUCAC-UCGUGCCGGu------CGCCCAac -5'
19292 3' -57.7 NC_004685.1 + 57666 1.09 0.000708
Target:  5'- gUGACAGUGAGCACGGCCAGCGGGUUGg -3'
miRNA:   3'- -ACUGUCACUCGUGCCGGUCGCCCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.