miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19292 5' -56.1 NC_004685.1 + 13679 0.66 0.678968
Target:  5'- --gGUCGUACUGGCcgcgGGUGCGgCGc-- -3'
miRNA:   3'- uugCAGCGUGACCG----UCACGUgGCauu -5'
19292 5' -56.1 NC_004685.1 + 22478 0.66 0.678968
Target:  5'- -gUGUCGUACUGGguGaaCACCGg-- -3'
miRNA:   3'- uuGCAGCGUGACCguCacGUGGCauu -5'
19292 5' -56.1 NC_004685.1 + 36591 0.66 0.645973
Target:  5'- --aGUCGCGCaccaacugGGCGGUGCGCUccgGUGu -3'
miRNA:   3'- uugCAGCGUGa-------CCGUCACGUGG---CAUu -5'
19292 5' -56.1 NC_004685.1 + 21361 0.68 0.547328
Target:  5'- uGGCGUCgGCGauCUGGCAGgcggcggGUGCCGUGu -3'
miRNA:   3'- -UUGCAG-CGU--GACCGUCa------CGUGGCAUu -5'
19292 5' -56.1 NC_004685.1 + 19258 0.68 0.515356
Target:  5'- -cUGUCGCcUUGGCGGUgcGCACCGa-- -3'
miRNA:   3'- uuGCAGCGuGACCGUCA--CGUGGCauu -5'
19292 5' -56.1 NC_004685.1 + 67889 0.69 0.504865
Target:  5'- cGGCGUCGCGCUGGCcGUcgaaCACUGg-- -3'
miRNA:   3'- -UUGCAGCGUGACCGuCAc---GUGGCauu -5'
19292 5' -56.1 NC_004685.1 + 19112 0.69 0.463884
Target:  5'- cGACGcCGCGCUGG-AGgcgGCGCCGg-- -3'
miRNA:   3'- -UUGCaGCGUGACCgUCa--CGUGGCauu -5'
19292 5' -56.1 NC_004685.1 + 41420 0.7 0.453911
Target:  5'- cGACGaCGCggacggACUGGCGGUGaCACCGa-- -3'
miRNA:   3'- -UUGCaGCG------UGACCGUCAC-GUGGCauu -5'
19292 5' -56.1 NC_004685.1 + 67495 0.7 0.453911
Target:  5'- cAGC-UCGCACUcGCGGUGCGCgGUGc -3'
miRNA:   3'- -UUGcAGCGUGAcCGUCACGUGgCAUu -5'
19292 5' -56.1 NC_004685.1 + 14935 0.7 0.415229
Target:  5'- gGGCGaCGCGgcgaUGGCGGUGCGgCGUGAg -3'
miRNA:   3'- -UUGCaGCGUg---ACCGUCACGUgGCAUU- -5'
19292 5' -56.1 NC_004685.1 + 58596 0.7 0.414288
Target:  5'- cGGCGUCGCgcccguuGCUGcGCAGUGuCGCCGc-- -3'
miRNA:   3'- -UUGCAGCG-------UGAC-CGUCAC-GUGGCauu -5'
19292 5' -56.1 NC_004685.1 + 24773 0.72 0.336039
Target:  5'- uGCGUucgaUGCGCUGGCGGUGCaugaaGCCGg-- -3'
miRNA:   3'- uUGCA----GCGUGACCGUCACG-----UGGCauu -5'
19292 5' -56.1 NC_004685.1 + 57700 1.03 0.002017
Target:  5'- gAACGUCGCACUGGCAGUGCACCGUAAc -3'
miRNA:   3'- -UUGCAGCGUGACCGUCACGUGGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.