Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19293 | 3' | -58.7 | NC_004685.1 | + | 2739 | 0.68 | 0.520329 |
Target: 5'- aCGUCGAacaUGGcCAGCgucucgucgggcacgGuGCCGcGGCGCg -3' miRNA: 3'- -GCAGCUg--ACCaGUCGa--------------C-UGGC-CCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 3936 | 0.66 | 0.643548 |
Target: 5'- aGgCGGcCUGGacccUCAGCggcucaGGCuCGGGCGCg -3' miRNA: 3'- gCaGCU-GACC----AGUCGa-----CUG-GCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 4748 | 0.69 | 0.459672 |
Target: 5'- gGUCGGCgcgcucgUGGUCGGCgcgcUGGCCGGauacuGUGCc -3' miRNA: 3'- gCAGCUG-------ACCAGUCG----ACUGGCC-----CGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 8104 | 0.69 | 0.423496 |
Target: 5'- gGUCGG-UGGUCAacgcGCUGGCCGaGGC-Cg -3' miRNA: 3'- gCAGCUgACCAGU----CGACUGGC-CCGcG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 8260 | 0.66 | 0.643548 |
Target: 5'- gGUCuACUGGgacaaaGGgUGGCgGGGCGUu -3' miRNA: 3'- gCAGcUGACCag----UCgACUGgCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 9146 | 0.66 | 0.633057 |
Target: 5'- uCGUgGACUGGUUcaAGCaGAUcaugaCGGGUGUu -3' miRNA: 3'- -GCAgCUGACCAG--UCGaCUG-----GCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 10085 | 0.66 | 0.601612 |
Target: 5'- cCGU-GGCUGGaaGGCgcaGCCGGuGCGCu -3' miRNA: 3'- -GCAgCUGACCagUCGac-UGGCC-CGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 10211 | 0.71 | 0.363066 |
Target: 5'- gGagGACUGG-CGGCUGGCCGGucuggcCGCc -3' miRNA: 3'- gCagCUGACCaGUCGACUGGCCc-----GCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 10848 | 0.67 | 0.539558 |
Target: 5'- uCGUCGGauuGUCgAGUUGAuCCGGGCGa -3' miRNA: 3'- -GCAGCUgacCAG-UCGACU-GGCCCGCg -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 12448 | 0.7 | 0.405618 |
Target: 5'- cCGcCGAgCgcccGGUCAGCUGACCagucgacguuGGCGCg -3' miRNA: 3'- -GCaGCU-Ga---CCAGUCGACUGGc---------CCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 15999 | 0.73 | 0.254152 |
Target: 5'- gCGUCGucccgccgugGCUGGUCaacgucgAGCUGAagaaGGGCGCg -3' miRNA: 3'- -GCAGC----------UGACCAG-------UCGACUgg--CCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 16509 | 0.66 | 0.633057 |
Target: 5'- gCGUCGugcaguacacccGCUGGg-GGCgcaaccGGCUGGGCGUg -3' miRNA: 3'- -GCAGC------------UGACCagUCGa-----CUGGCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 18219 | 0.71 | 0.363066 |
Target: 5'- ---gGACUGGaUCgAGCUGucgucgGCUGGGCGCa -3' miRNA: 3'- gcagCUGACC-AG-UCGAC------UGGCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 18411 | 0.77 | 0.13423 |
Target: 5'- aGUCGgaccuGCUGGUCAGCUacgcccagaucGACCGGGC-Ca -3' miRNA: 3'- gCAGC-----UGACCAGUCGA-----------CUGGCCCGcG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 21673 | 0.66 | 0.591168 |
Target: 5'- cCGUgGA--GGUCAcGCUcGACgaCGGGCGCg -3' miRNA: 3'- -GCAgCUgaCCAGU-CGA-CUG--GCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 23758 | 0.72 | 0.301666 |
Target: 5'- uGUCgGGCaGGUcCAGCUuGCCGGGCaGCg -3' miRNA: 3'- gCAG-CUGaCCA-GUCGAcUGGCCCG-CG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 29864 | 0.66 | 0.591168 |
Target: 5'- uGUCGGCcGG-CAGCggaucgucagGGCUGGGCa- -3' miRNA: 3'- gCAGCUGaCCaGUCGa---------CUGGCCCGcg -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 30774 | 0.67 | 0.529406 |
Target: 5'- cCGggUGACUccGGcuUCGGCaaGCCGGGCGCg -3' miRNA: 3'- -GCa-GCUGA--CC--AGUCGacUGGCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 33108 | 0.68 | 0.470169 |
Target: 5'- gCGUCGGCcaGGUUGaucggacccGCgucGCCGGGCGCg -3' miRNA: 3'- -GCAGCUGa-CCAGU---------CGac-UGGCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 36451 | 0.71 | 0.334402 |
Target: 5'- uGUCuGACUGGUgaaguugccgccgagCAGCUugucGACCGGGuUGCg -3' miRNA: 3'- gCAG-CUGACCA---------------GUCGA----CUGGCCC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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