Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19293 | 3' | -58.7 | NC_004685.1 | + | 50484 | 0.68 | 0.499398 |
Target: 5'- gCGUCGAgCUGGUCGGCgcGugCGauGUGCc -3' miRNA: 3'- -GCAGCU-GACCAGUCGa-CugGCc-CGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 33108 | 0.68 | 0.470169 |
Target: 5'- gCGUCGGCcaGGUUGaucggacccGCgucGCCGGGCGCg -3' miRNA: 3'- -GCAGCUGa-CCAGU---------CGac-UGGCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 4748 | 0.69 | 0.459672 |
Target: 5'- gGUCGGCgcgcucgUGGUCGGCgcgcUGGCCGGauacuGUGCc -3' miRNA: 3'- gCAGCUG-------ACCAGUCG----ACUGGCC-----CGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 53296 | 0.69 | 0.451176 |
Target: 5'- uCGUUGAacugGGUCagcuccaucaGGCUGAggucCUGGGCGCu -3' miRNA: 3'- -GCAGCUga--CCAG----------UCGACU----GGCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 8104 | 0.69 | 0.423496 |
Target: 5'- gGUCGG-UGGUCAacgcGCUGGCCGaGGC-Cg -3' miRNA: 3'- gCAGCUgACCAGU----CGACUGGC-CCGcG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 12448 | 0.7 | 0.405618 |
Target: 5'- cCGcCGAgCgcccGGUCAGCUGACCagucgacguuGGCGCg -3' miRNA: 3'- -GCaGCU-Ga---CCAGUCGACUGGc---------CCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 59453 | 0.7 | 0.396859 |
Target: 5'- aGUCGAUgacGGUCAGCUcGCCguuggacagcucGGGCGg -3' miRNA: 3'- gCAGCUGa--CCAGUCGAcUGG------------CCCGCg -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 18219 | 0.71 | 0.363066 |
Target: 5'- ---gGACUGGaUCgAGCUGucgucgGCUGGGCGCa -3' miRNA: 3'- gcagCUGACC-AG-UCGAC------UGGCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 10211 | 0.71 | 0.363066 |
Target: 5'- gGagGACUGG-CGGCUGGCCGGucuggcCGCc -3' miRNA: 3'- gCagCUGACCaGUCGACUGGCCc-----GCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 36451 | 0.71 | 0.334402 |
Target: 5'- uGUCuGACUGGUgaaguugccgccgagCAGCUugucGACCGGGuUGCg -3' miRNA: 3'- gCAG-CUGACCA---------------GUCGA----CUGGCCC-GCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 41836 | 0.71 | 0.32371 |
Target: 5'- aGUCGACcuccgUGGUgcaCGGC-GGCCGGGUGUu -3' miRNA: 3'- gCAGCUG-----ACCA---GUCGaCUGGCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 23758 | 0.72 | 0.301666 |
Target: 5'- uGUCgGGCaGGUcCAGCUuGCCGGGCaGCg -3' miRNA: 3'- gCAG-CUGaCCA-GUCGAcUGGCCCG-CG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 15999 | 0.73 | 0.254152 |
Target: 5'- gCGUCGucccgccgugGCUGGUCaacgucgAGCUGAagaaGGGCGCg -3' miRNA: 3'- -GCAGC----------UGACCAG-------UCGACUgg--CCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 44306 | 0.74 | 0.230769 |
Target: 5'- -aUCGAaUGGcccCAGCUGGgCGGGCGCa -3' miRNA: 3'- gcAGCUgACCa--GUCGACUgGCCCGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 48202 | 0.74 | 0.22451 |
Target: 5'- cCGUCGAaugcgcgUUGGUCgGGUUGACCGG-CGCa -3' miRNA: 3'- -GCAGCU-------GACCAG-UCGACUGGCCcGCG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 18411 | 0.77 | 0.13423 |
Target: 5'- aGUCGgaccuGCUGGUCAGCUacgcccagaucGACCGGGC-Ca -3' miRNA: 3'- gCAGC-----UGACCAGUCGA-----------CUGGCCCGcG- -5' |
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19293 | 3' | -58.7 | NC_004685.1 | + | 57228 | 1.11 | 0.00048 |
Target: 5'- aCGUCGACUGGUCAGCUGACCGGGCGCu -3' miRNA: 3'- -GCAGCUGACCAGUCGACUGGCCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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