miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 3' -55.7 NC_004685.1 + 24786 0.67 0.729718
Target:  5'- -cUGGCGgUGCAUgaagccggGGUCCGCGCGGu -3'
miRNA:   3'- gaGCCGCgGCGUAag------CUAGGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 49995 0.67 0.729718
Target:  5'- cCUCGGCccgccacgGCCGC--UCGugcagCCACACGu -3'
miRNA:   3'- -GAGCCG--------CGGCGuaAGCua---GGUGUGCu -5'
19294 3' -55.7 NC_004685.1 + 58593 0.67 0.719353
Target:  5'- uCUCGGCGUCGCGccCGuugCUGCGCa- -3'
miRNA:   3'- -GAGCCGCGGCGUaaGCua-GGUGUGcu -5'
19294 3' -55.7 NC_004685.1 + 41244 0.67 0.719353
Target:  5'- -cUGGCGCgCGCGUUCGG-CUugguCGCGGa -3'
miRNA:   3'- gaGCCGCG-GCGUAAGCUaGGu---GUGCU- -5'
19294 3' -55.7 NC_004685.1 + 64188 0.67 0.719353
Target:  5'- -gCGGUGCCGCGgugUCGAguaguCGCGGa -3'
miRNA:   3'- gaGCCGCGGCGUa--AGCUaggu-GUGCU- -5'
19294 3' -55.7 NC_004685.1 + 27668 0.67 0.708905
Target:  5'- cCUCGuuGCCGuCAgcgUCGAUCgGgGCGAa -3'
miRNA:   3'- -GAGCcgCGGC-GUa--AGCUAGgUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 3256 0.67 0.705756
Target:  5'- aUCGGCGCCGguUUgGGUUCGgugaagucgagguuCugGAa -3'
miRNA:   3'- gAGCCGCGGCguAAgCUAGGU--------------GugCU- -5'
19294 3' -55.7 NC_004685.1 + 59621 0.67 0.698386
Target:  5'- -aCGGCcccagGUCGCGcaUGAUCCACACGu -3'
miRNA:   3'- gaGCCG-----CGGCGUaaGCUAGGUGUGCu -5'
19294 3' -55.7 NC_004685.1 + 2370 0.67 0.698386
Target:  5'- -cCGG-GCCaGCGUUCGG-CCAgCACGAg -3'
miRNA:   3'- gaGCCgCGG-CGUAAGCUaGGU-GUGCU- -5'
19294 3' -55.7 NC_004685.1 + 4313 0.67 0.695217
Target:  5'- aCUCGGCgggccucuccgcgaGCCGCAgggUUGAUCCugugaGCACc- -3'
miRNA:   3'- -GAGCCG--------------CGGCGUa--AGCUAGG-----UGUGcu -5'
19294 3' -55.7 NC_004685.1 + 54100 0.68 0.677174
Target:  5'- gCUCGGCGCgGCAcUUG-UCCgaGCACa- -3'
miRNA:   3'- -GAGCCGCGgCGUaAGCuAGG--UGUGcu -5'
19294 3' -55.7 NC_004685.1 + 32273 0.68 0.677174
Target:  5'- -cCGGUGgCGCGggCGGUCCuggugGCGCGGc -3'
miRNA:   3'- gaGCCGCgGCGUaaGCUAGG-----UGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 4231 0.68 0.675042
Target:  5'- -cCGGCGaCGCGUUCGGccagcuucuccaCCGCGCGGu -3'
miRNA:   3'- gaGCCGCgGCGUAAGCUa-----------GGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 4569 0.68 0.655799
Target:  5'- uUCGG-GCCGCGUcaGGUCCGCucgcugGCGAa -3'
miRNA:   3'- gAGCCgCGGCGUAagCUAGGUG------UGCU- -5'
19294 3' -55.7 NC_004685.1 + 58486 0.68 0.654728
Target:  5'- gUCGGCGaacgcguugaacaUCGCAUcgugcUCGAUgCACGCGGc -3'
miRNA:   3'- gAGCCGC-------------GGCGUA-----AGCUAgGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 37620 0.68 0.645076
Target:  5'- gCUCGGCGCguuccccaGCgAUUCGGUCgCGgGCGGc -3'
miRNA:   3'- -GAGCCGCGg-------CG-UAAGCUAG-GUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 14041 0.68 0.645076
Target:  5'- -aCGGCaGCCGCAUccuguUCGGcgCC-CGCGAg -3'
miRNA:   3'- gaGCCG-CGGCGUA-----AGCUa-GGuGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 51579 0.68 0.634341
Target:  5'- aCUCGGacggGCCGUAgUUGAUCCGCgACa- -3'
miRNA:   3'- -GAGCCg---CGGCGUaAGCUAGGUG-UGcu -5'
19294 3' -55.7 NC_004685.1 + 13372 0.68 0.623605
Target:  5'- --gGGUGCUGCucgacUUCGAggugaagCCGCACGAu -3'
miRNA:   3'- gagCCGCGGCGu----AAGCUa------GGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 14577 0.68 0.623605
Target:  5'- aUUGGCGUCGCAggCGAcgUCgACAcCGAc -3'
miRNA:   3'- gAGCCGCGGCGUaaGCU--AGgUGU-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.