miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 5' -60.7 NC_004685.1 + 54140 0.67 0.503547
Target:  5'- gCCUCgGCCua--UCGGCUccuugauggUUGUGCCGCa -3'
miRNA:   3'- -GGAG-CGGccagAGCCGA---------AGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 66209 0.67 0.497729
Target:  5'- gCCaCGCUGGgCaccagaaccucaaacUUGGCUgcCGCGCCGCa -3'
miRNA:   3'- -GGaGCGGCCaG---------------AGCCGAa-GCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 30203 0.67 0.493867
Target:  5'- gCUCGUCGGcCUgGGCgcCGCgGCCa- -3'
miRNA:   3'- gGAGCGGCCaGAgCCGaaGCG-CGGcg -5'
19294 5' -60.7 NC_004685.1 + 34522 0.67 0.493867
Target:  5'- --aCGCCuGG-CUCGGCUggaGCGUaCGCg -3'
miRNA:   3'- ggaGCGG-CCaGAGCCGAag-CGCG-GCG- -5'
19294 5' -60.7 NC_004685.1 + 47853 0.67 0.493867
Target:  5'- gCUUCGCCu-UCUUGGCUgcugcUCGCaGCCGg -3'
miRNA:   3'- -GGAGCGGccAGAGCCGA-----AGCG-CGGCg -5'
19294 5' -60.7 NC_004685.1 + 53620 0.67 0.492904
Target:  5'- aUCUCGUCGGUgacgUUCaGGCcgccgaugcgguaUUCGCGgCGCg -3'
miRNA:   3'- -GGAGCGGCCA----GAG-CCG-------------AAGCGCgGCG- -5'
19294 5' -60.7 NC_004685.1 + 45783 0.67 0.4881
Target:  5'- aCCUCGCCcagccacuucaccacGaacGUCUCGGCgUCG-GCCGg -3'
miRNA:   3'- -GGAGCGG---------------C---CAGAGCCGaAGCgCGGCg -5'
19294 5' -60.7 NC_004685.1 + 31236 0.67 0.484273
Target:  5'- --gCGUCGGcUCgggccuggUCGGCaUCGCGgCCGCg -3'
miRNA:   3'- ggaGCGGCC-AG--------AGCCGaAGCGC-GGCG- -5'
19294 5' -60.7 NC_004685.1 + 61216 0.67 0.484273
Target:  5'- gCCUCgGCCaG-CgCGGCcgcacccgucUUCGCGCCGUa -3'
miRNA:   3'- -GGAG-CGGcCaGaGCCG----------AAGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 12793 0.67 0.484273
Target:  5'- gCCaUCGCCcaGGcCgagCGGCUggCGgGCCGUg -3'
miRNA:   3'- -GG-AGCGG--CCaGa--GCCGAa-GCgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 16118 0.67 0.483319
Target:  5'- gCCgacgCGCacggccaCGGUCcccuggagUCGGC--CGCGCCGCg -3'
miRNA:   3'- -GGa---GCG-------GCCAG--------AGCCGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 61554 0.67 0.47856
Target:  5'- uCCUCGgagaugaugcggaacCCGGcCUCGGCcagCGCGuuGa -3'
miRNA:   3'- -GGAGC---------------GGCCaGAGCCGaa-GCGCggCg -5'
19294 5' -60.7 NC_004685.1 + 41415 0.67 0.474769
Target:  5'- --gCGCaGGUCUUccaGC-UCGCGCCGCu -3'
miRNA:   3'- ggaGCGgCCAGAGc--CGaAGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 55385 0.67 0.474769
Target:  5'- -gUCGCCGGUgucCUCGGC-----GCCGCa -3'
miRNA:   3'- ggAGCGGCCA---GAGCCGaagcgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 34319 0.67 0.474769
Target:  5'- uCCUUGaCGGUCaccacguacgUCGGCUgagUGaGCCGCa -3'
miRNA:   3'- -GGAGCgGCCAG----------AGCCGAa--GCgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 38587 0.67 0.465359
Target:  5'- cCCUUGCUGaugCcgaagUCGGCgucgaGCGCCGCa -3'
miRNA:   3'- -GGAGCGGCca-G-----AGCCGaag--CGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 39216 0.67 0.465359
Target:  5'- --cCGCCuGG-CggCGGCUUCGgCGCCGg -3'
miRNA:   3'- ggaGCGG-CCaGa-GCCGAAGC-GCGGCg -5'
19294 5' -60.7 NC_004685.1 + 39276 0.67 0.465359
Target:  5'- gCCUCGCCGuG-UUCGGCc-CGC-CCGUu -3'
miRNA:   3'- -GGAGCGGC-CaGAGCCGaaGCGcGGCG- -5'
19294 5' -60.7 NC_004685.1 + 50900 0.67 0.456048
Target:  5'- --cCGCgCGGUcCUCGGCggucagaugCGCGCCa- -3'
miRNA:   3'- ggaGCG-GCCA-GAGCCGaa-------GCGCGGcg -5'
19294 5' -60.7 NC_004685.1 + 32880 0.68 0.450509
Target:  5'- gCCggUGCCGGUgaugacgcaccagccCUgCGGC-UCGgGCCGCc -3'
miRNA:   3'- -GGa-GCGGCCA---------------GA-GCCGaAGCgCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.