miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19295 3' -58.4 NC_004685.1 + 54076 0.66 0.642173
Target:  5'- --cCACCAUgucagGGUCGCCgGGGUUGuagucGACg -3'
miRNA:   3'- guuGUGGUG-----CCAGCGGgUCCAGC-----CUG- -5'
19295 3' -58.4 NC_004685.1 + 22701 0.66 0.642173
Target:  5'- --uCACCGCGGUCGgCguGGaCGaGGCc -3'
miRNA:   3'- guuGUGGUGCCAGCgGguCCaGC-CUG- -5'
19295 3' -58.4 NC_004685.1 + 52013 0.66 0.642173
Target:  5'- cCGACGCCGgGG-CgGCCCcGGUC-GACa -3'
miRNA:   3'- -GUUGUGGUgCCaG-CGGGuCCAGcCUG- -5'
19295 3' -58.4 NC_004685.1 + 52517 0.66 0.631593
Target:  5'- gCAGCGCCGCGGcgaaCGCCgacgccauCAGGUucagcCGGAa -3'
miRNA:   3'- -GUUGUGGUGCCa---GCGG--------GUCCA-----GCCUg -5'
19295 3' -58.4 NC_004685.1 + 51106 0.66 0.625245
Target:  5'- cCGAUgcuGCCGCGGUgGCCCuugaugGGGguggccgacagacccUCGGGCu -3'
miRNA:   3'- -GUUG---UGGUGCCAgCGGG------UCC---------------AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 33599 0.66 0.621014
Target:  5'- aCGAgGCCGCGGUgGacauCUGGGuUCGGAUg -3'
miRNA:   3'- -GUUgUGGUGCCAgCg---GGUCC-AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 49587 0.66 0.621014
Target:  5'- cCAGCACC-CGcG-CGCCCucguAGG-CGGGCu -3'
miRNA:   3'- -GUUGUGGuGC-CaGCGGG----UCCaGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 41769 0.66 0.619957
Target:  5'- uCGACAUCuuugguGgGGUCGCCCaccaucgAGGUCGGcCc -3'
miRNA:   3'- -GUUGUGG------UgCCAGCGGG-------UCCAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 55840 0.66 0.617842
Target:  5'- aCAGCACCGCGGUCagggugugggucuuGCCgCAcuGG-CGGGg -3'
miRNA:   3'- -GUUGUGGUGCCAG--------------CGG-GU--CCaGCCUg -5'
19295 3' -58.4 NC_004685.1 + 1133 0.66 0.610445
Target:  5'- -cGCAUCGgGG-CGCCCGcaUCGGACu -3'
miRNA:   3'- guUGUGGUgCCaGCGGGUccAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 58535 0.66 0.607277
Target:  5'- uCAGCGCCGgugaacccguUGGUggcgucggccaccgCGCCCAGGUCGa-- -3'
miRNA:   3'- -GUUGUGGU----------GCCA--------------GCGGGUCCAGCcug -5'
19295 3' -58.4 NC_004685.1 + 61590 0.66 0.599892
Target:  5'- gAACACC-CGGUCGgUCuuGGUCaGACc -3'
miRNA:   3'- gUUGUGGuGCCAGCgGGu-CCAGcCUG- -5'
19295 3' -58.4 NC_004685.1 + 28746 0.66 0.589365
Target:  5'- gCGACACCuCGGUCuCCCAGGaUCa--- -3'
miRNA:   3'- -GUUGUGGuGCCAGcGGGUCC-AGccug -5'
19295 3' -58.4 NC_004685.1 + 56154 0.67 0.578871
Target:  5'- uCAAgACCGCGGUCGgugCCucGUCGGGg -3'
miRNA:   3'- -GUUgUGGUGCCAGCg--GGucCAGCCUg -5'
19295 3' -58.4 NC_004685.1 + 2877 0.67 0.578871
Target:  5'- cCggUGCgCACGG-CGCuggCCAGGaUCGGGCa -3'
miRNA:   3'- -GuuGUG-GUGCCaGCG---GGUCC-AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 67953 0.67 0.578871
Target:  5'- aGGCGCCGCGGUgaaCGUCCcgacgGGGuguUCGGAa -3'
miRNA:   3'- gUUGUGGUGCCA---GCGGG-----UCC---AGCCUg -5'
19295 3' -58.4 NC_004685.1 + 57215 0.67 0.572594
Target:  5'- -cGCGuCCACGGUCGgccccucguugucgaCCCAGGggcgcaGGGCu -3'
miRNA:   3'- guUGU-GGUGCCAGC---------------GGGUCCag----CCUG- -5'
19295 3' -58.4 NC_004685.1 + 38095 0.67 0.568418
Target:  5'- uCGAUGCCcCGGUUcucacgGUUCGGGUUGGGCg -3'
miRNA:   3'- -GUUGUGGuGCCAG------CGGGUCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 41562 0.67 0.568418
Target:  5'- uCGACgGCUGCGGUgggCGCCCccacgguggAGGUCGGcGCg -3'
miRNA:   3'- -GUUG-UGGUGCCA---GCGGG---------UCCAGCC-UG- -5'
19295 3' -58.4 NC_004685.1 + 13968 0.67 0.558013
Target:  5'- cCGAUACCGCGGUgCGCggCgAGGaCGGAg -3'
miRNA:   3'- -GUUGUGGUGCCA-GCG--GgUCCaGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.