miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19295 3' -58.4 NC_004685.1 + 55191 1.08 0.000894
Target:  5'- uCAACACCACGGUCGCCCAGGUCGGACc -3'
miRNA:   3'- -GUUGUGGUGCCAGCGGGUCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 46168 0.81 0.072282
Target:  5'- gGugACCGgGGUCGCCCGcGUCGGGCg -3'
miRNA:   3'- gUugUGGUgCCAGCGGGUcCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 2338 0.77 0.150498
Target:  5'- uGACGCgGCGcacGUCGCCgAGGUUGGGCa -3'
miRNA:   3'- gUUGUGgUGC---CAGCGGgUCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 29129 0.75 0.180375
Target:  5'- uCGACACCGCGGUCcacuccaGCuCCGcugcGGUCGGAUa -3'
miRNA:   3'- -GUUGUGGUGCCAG-------CG-GGU----CCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 37056 0.75 0.180375
Target:  5'- aGACGCCGguguuguUGGUCgGCCCAGGgggCGGGCc -3'
miRNA:   3'- gUUGUGGU-------GCCAG-CGGGUCCa--GCCUG- -5'
19295 3' -58.4 NC_004685.1 + 29892 0.75 0.185598
Target:  5'- gGGCACUgucgucgugGCGGUCGucCCCAGGUCGGcCa -3'
miRNA:   3'- gUUGUGG---------UGCCAGC--GGGUCCAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 39479 0.74 0.222046
Target:  5'- gAugGCCGCGG-CGCCCAGG-CcGACg -3'
miRNA:   3'- gUugUGGUGCCaGCGGGUCCaGcCUG- -5'
19295 3' -58.4 NC_004685.1 + 51550 0.72 0.28449
Target:  5'- gAGCGCCGCGGUcggugccacCGCCCuGaacUCGGACg -3'
miRNA:   3'- gUUGUGGUGCCA---------GCGGGuCc--AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 36862 0.72 0.290743
Target:  5'- uCGACACCGCGG-CGUCCGGcaacaucGUCGGcCg -3'
miRNA:   3'- -GUUGUGGUGCCaGCGGGUC-------CAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 53150 0.71 0.320591
Target:  5'- cCAuCACCGCGGUCGCCuucggccgCAGGcUGGAg -3'
miRNA:   3'- -GUuGUGGUGCCAGCGG--------GUCCaGCCUg -5'
19295 3' -58.4 NC_004685.1 + 31681 0.71 0.325911
Target:  5'- -uGC-CCGCGGUCGCgcccugcgucaccaCCAGGcgCGGGCg -3'
miRNA:   3'- guUGuGGUGCCAGCG--------------GGUCCa-GCCUG- -5'
19295 3' -58.4 NC_004685.1 + 25823 0.71 0.335964
Target:  5'- uCAGCGCCGCGGgcucUCGCCC--GUCaGACa -3'
miRNA:   3'- -GUUGUGGUGCC----AGCGGGucCAGcCUG- -5'
19295 3' -58.4 NC_004685.1 + 441 0.71 0.335964
Target:  5'- ---aGCCGCGGUCGgUgAGGUCGG-Cg -3'
miRNA:   3'- guugUGGUGCCAGCgGgUCCAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 33288 0.71 0.335964
Target:  5'- -cGCACCAgGGcggggaagUUGCCCAGGccgccgUCGGGCg -3'
miRNA:   3'- guUGUGGUgCC--------AGCGGGUCC------AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 62497 0.71 0.360016
Target:  5'- gAACGCCACGGcCGggccuCCCGacGGcUCGGACa -3'
miRNA:   3'- gUUGUGGUGCCaGC-----GGGU--CC-AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 56119 0.7 0.402702
Target:  5'- gGACAggucCCGcCGGUCGUUCGGGUugCGGACc -3'
miRNA:   3'- gUUGU----GGU-GCCAGCGGGUCCA--GCCUG- -5'
19295 3' -58.4 NC_004685.1 + 43203 0.7 0.411616
Target:  5'- gGGCGCUucaGGUCGCCCuucuggguggAGG-CGGGCa -3'
miRNA:   3'- gUUGUGGug-CCAGCGGG----------UCCaGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 44737 0.69 0.420651
Target:  5'- gCGGCACCgGCG--UGCCCugguGGGUCGGACc -3'
miRNA:   3'- -GUUGUGG-UGCcaGCGGG----UCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 25974 0.69 0.429806
Target:  5'- cCGACACCAuCGGUCuUCCAGc-CGGGCa -3'
miRNA:   3'- -GUUGUGGU-GCCAGcGGGUCcaGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 55318 0.69 0.457952
Target:  5'- uCGACACCACGGggGUgC-GGUgCGGGCa -3'
miRNA:   3'- -GUUGUGGUGCCagCGgGuCCA-GCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.