Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19295 | 3' | -58.4 | NC_004685.1 | + | 13968 | 0.67 | 0.558013 |
Target: 5'- cCGAUACCGCGGUgCGCggCgAGGaCGGAg -3' miRNA: 3'- -GUUGUGGUGCCA-GCG--GgUCCaGCCUg -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 53975 | 0.67 | 0.547662 |
Target: 5'- cCAAC-UCGgGGUgGCCCAGGacUCGGGa -3' miRNA: 3'- -GUUGuGGUgCCAgCGGGUCC--AGCCUg -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 67136 | 0.67 | 0.5343 |
Target: 5'- cCAACGCCAugcuggcauuccccUGGUCGCCCccGGUCccucgGGAg -3' miRNA: 3'- -GUUGUGGU--------------GCCAGCGGGu-CCAG-----CCUg -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 16130 | 0.68 | 0.517004 |
Target: 5'- ---gGCCACGGUCcCCUGGaGUCGGcCg -3' miRNA: 3'- guugUGGUGCCAGcGGGUC-CAGCCuG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 48147 | 0.68 | 0.488041 |
Target: 5'- cCGGCACCACcccggcuggcccgauGUgGCCCGGcucGUCGGGCa -3' miRNA: 3'- -GUUGUGGUGc--------------CAgCGGGUC---CAGCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 5398 | 0.68 | 0.487056 |
Target: 5'- cCGACACCACGGuggugaagcUgGCCgAGGa-GGACa -3' miRNA: 3'- -GUUGUGGUGCC---------AgCGGgUCCagCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 59617 | 0.68 | 0.487056 |
Target: 5'- ---aGCCACGG-C-CCCAGGUCGcGCa -3' miRNA: 3'- guugUGGUGCCaGcGGGUCCAGCcUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 4276 | 0.68 | 0.487056 |
Target: 5'- gAAUcCCACGGUCGCUCagucucgacuugAGGUUGaGACu -3' miRNA: 3'- gUUGuGGUGCCAGCGGG------------UCCAGC-CUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 8232 | 0.69 | 0.467552 |
Target: 5'- aCAGCgucgGCUACGGcgacgcUGCCCAGGUCuacugGGACa -3' miRNA: 3'- -GUUG----UGGUGCCa-----GCGGGUCCAG-----CCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 37189 | 0.69 | 0.457952 |
Target: 5'- gAGCuuGCCGCcGUUGCcugCCAGGUUGGGCa -3' miRNA: 3'- gUUG--UGGUGcCAGCG---GGUCCAGCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 55318 | 0.69 | 0.457952 |
Target: 5'- uCGACACCACGGggGUgC-GGUgCGGGCa -3' miRNA: 3'- -GUUGUGGUGCCagCGgGuCCA-GCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 25974 | 0.69 | 0.429806 |
Target: 5'- cCGACACCAuCGGUCuUCCAGc-CGGGCa -3' miRNA: 3'- -GUUGUGGU-GCCAGcGGGUCcaGCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 44737 | 0.69 | 0.420651 |
Target: 5'- gCGGCACCgGCG--UGCCCugguGGGUCGGACc -3' miRNA: 3'- -GUUGUGG-UGCcaGCGGG----UCCAGCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 43203 | 0.7 | 0.411616 |
Target: 5'- gGGCGCUucaGGUCGCCCuucuggguggAGG-CGGGCa -3' miRNA: 3'- gUUGUGGug-CCAGCGGG----------UCCaGCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 56119 | 0.7 | 0.402702 |
Target: 5'- gGACAggucCCGcCGGUCGUUCGGGUugCGGACc -3' miRNA: 3'- gUUGU----GGU-GCCAGCGGGUCCA--GCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 62497 | 0.71 | 0.360016 |
Target: 5'- gAACGCCACGGcCGggccuCCCGacGGcUCGGACa -3' miRNA: 3'- gUUGUGGUGCCaGC-----GGGU--CC-AGCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 441 | 0.71 | 0.335964 |
Target: 5'- ---aGCCGCGGUCGgUgAGGUCGG-Cg -3' miRNA: 3'- guugUGGUGCCAGCgGgUCCAGCCuG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 33288 | 0.71 | 0.335964 |
Target: 5'- -cGCACCAgGGcggggaagUUGCCCAGGccgccgUCGGGCg -3' miRNA: 3'- guUGUGGUgCC--------AGCGGGUCC------AGCCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 25823 | 0.71 | 0.335964 |
Target: 5'- uCAGCGCCGCGGgcucUCGCCC--GUCaGACa -3' miRNA: 3'- -GUUGUGGUGCC----AGCGGGucCAGcCUG- -5' |
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19295 | 3' | -58.4 | NC_004685.1 | + | 31681 | 0.71 | 0.325911 |
Target: 5'- -uGC-CCGCGGUCGCgcccugcgucaccaCCAGGcgCGGGCg -3' miRNA: 3'- guUGuGGUGCCAGCG--------------GGUCCa-GCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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