miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19295 3' -58.4 NC_004685.1 + 441 0.71 0.335964
Target:  5'- ---aGCCGCGGUCGgUgAGGUCGG-Cg -3'
miRNA:   3'- guugUGGUGCCAGCgGgUCCAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 1133 0.66 0.610445
Target:  5'- -cGCAUCGgGG-CGCCCGcaUCGGACu -3'
miRNA:   3'- guUGUGGUgCCaGCGGGUccAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 2338 0.77 0.150498
Target:  5'- uGACGCgGCGcacGUCGCCgAGGUUGGGCa -3'
miRNA:   3'- gUUGUGgUGC---CAGCGGgUCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 2877 0.67 0.578871
Target:  5'- cCggUGCgCACGG-CGCuggCCAGGaUCGGGCa -3'
miRNA:   3'- -GuuGUG-GUGCCaGCG---GGUCC-AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 4276 0.68 0.487056
Target:  5'- gAAUcCCACGGUCGCUCagucucgacuugAGGUUGaGACu -3'
miRNA:   3'- gUUGuGGUGCCAGCGGG------------UCCAGC-CUG- -5'
19295 3' -58.4 NC_004685.1 + 5398 0.68 0.487056
Target:  5'- cCGACACCACGGuggugaagcUgGCCgAGGa-GGACa -3'
miRNA:   3'- -GUUGUGGUGCC---------AgCGGgUCCagCCUG- -5'
19295 3' -58.4 NC_004685.1 + 8232 0.69 0.467552
Target:  5'- aCAGCgucgGCUACGGcgacgcUGCCCAGGUCuacugGGACa -3'
miRNA:   3'- -GUUG----UGGUGCCa-----GCGGGUCCAG-----CCUG- -5'
19295 3' -58.4 NC_004685.1 + 13968 0.67 0.558013
Target:  5'- cCGAUACCGCGGUgCGCggCgAGGaCGGAg -3'
miRNA:   3'- -GUUGUGGUGCCA-GCG--GgUCCaGCCUg -5'
19295 3' -58.4 NC_004685.1 + 16130 0.68 0.517004
Target:  5'- ---gGCCACGGUCcCCUGGaGUCGGcCg -3'
miRNA:   3'- guugUGGUGCCAGcGGGUC-CAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 22701 0.66 0.642173
Target:  5'- --uCACCGCGGUCGgCguGGaCGaGGCc -3'
miRNA:   3'- guuGUGGUGCCAGCgGguCCaGC-CUG- -5'
19295 3' -58.4 NC_004685.1 + 25823 0.71 0.335964
Target:  5'- uCAGCGCCGCGGgcucUCGCCC--GUCaGACa -3'
miRNA:   3'- -GUUGUGGUGCC----AGCGGGucCAGcCUG- -5'
19295 3' -58.4 NC_004685.1 + 25974 0.69 0.429806
Target:  5'- cCGACACCAuCGGUCuUCCAGc-CGGGCa -3'
miRNA:   3'- -GUUGUGGU-GCCAGcGGGUCcaGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 28746 0.66 0.589365
Target:  5'- gCGACACCuCGGUCuCCCAGGaUCa--- -3'
miRNA:   3'- -GUUGUGGuGCCAGcGGGUCC-AGccug -5'
19295 3' -58.4 NC_004685.1 + 29129 0.75 0.180375
Target:  5'- uCGACACCGCGGUCcacuccaGCuCCGcugcGGUCGGAUa -3'
miRNA:   3'- -GUUGUGGUGCCAG-------CG-GGU----CCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 29892 0.75 0.185598
Target:  5'- gGGCACUgucgucgugGCGGUCGucCCCAGGUCGGcCa -3'
miRNA:   3'- gUUGUGG---------UGCCAGC--GGGUCCAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 31681 0.71 0.325911
Target:  5'- -uGC-CCGCGGUCGCgcccugcgucaccaCCAGGcgCGGGCg -3'
miRNA:   3'- guUGuGGUGCCAGCG--------------GGUCCa-GCCUG- -5'
19295 3' -58.4 NC_004685.1 + 33288 0.71 0.335964
Target:  5'- -cGCACCAgGGcggggaagUUGCCCAGGccgccgUCGGGCg -3'
miRNA:   3'- guUGUGGUgCC--------AGCGGGUCC------AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 33599 0.66 0.621014
Target:  5'- aCGAgGCCGCGGUgGacauCUGGGuUCGGAUg -3'
miRNA:   3'- -GUUgUGGUGCCAgCg---GGUCC-AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 36862 0.72 0.290743
Target:  5'- uCGACACCGCGG-CGUCCGGcaacaucGUCGGcCg -3'
miRNA:   3'- -GUUGUGGUGCCaGCGGGUC-------CAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 37056 0.75 0.180375
Target:  5'- aGACGCCGguguuguUGGUCgGCCCAGGgggCGGGCc -3'
miRNA:   3'- gUUGUGGU-------GCCAG-CGGGUCCa--GCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.