miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19295 3' -58.4 NC_004685.1 + 37189 0.69 0.457952
Target:  5'- gAGCuuGCCGCcGUUGCcugCCAGGUUGGGCa -3'
miRNA:   3'- gUUG--UGGUGcCAGCG---GGUCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 38095 0.67 0.568418
Target:  5'- uCGAUGCCcCGGUUcucacgGUUCGGGUUGGGCg -3'
miRNA:   3'- -GUUGUGGuGCCAG------CGGGUCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 39479 0.74 0.222046
Target:  5'- gAugGCCGCGG-CGCCCAGG-CcGACg -3'
miRNA:   3'- gUugUGGUGCCaGCGGGUCCaGcCUG- -5'
19295 3' -58.4 NC_004685.1 + 41562 0.67 0.568418
Target:  5'- uCGACgGCUGCGGUgggCGCCCccacgguggAGGUCGGcGCg -3'
miRNA:   3'- -GUUG-UGGUGCCA---GCGGG---------UCCAGCC-UG- -5'
19295 3' -58.4 NC_004685.1 + 41769 0.66 0.619957
Target:  5'- uCGACAUCuuugguGgGGUCGCCCaccaucgAGGUCGGcCc -3'
miRNA:   3'- -GUUGUGG------UgCCAGCGGG-------UCCAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 43203 0.7 0.411616
Target:  5'- gGGCGCUucaGGUCGCCCuucuggguggAGG-CGGGCa -3'
miRNA:   3'- gUUGUGGug-CCAGCGGG----------UCCaGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 44737 0.69 0.420651
Target:  5'- gCGGCACCgGCG--UGCCCugguGGGUCGGACc -3'
miRNA:   3'- -GUUGUGG-UGCcaGCGGG----UCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 46168 0.81 0.072282
Target:  5'- gGugACCGgGGUCGCCCGcGUCGGGCg -3'
miRNA:   3'- gUugUGGUgCCAGCGGGUcCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 48147 0.68 0.488041
Target:  5'- cCGGCACCACcccggcuggcccgauGUgGCCCGGcucGUCGGGCa -3'
miRNA:   3'- -GUUGUGGUGc--------------CAgCGGGUC---CAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 49587 0.66 0.621014
Target:  5'- cCAGCACC-CGcG-CGCCCucguAGG-CGGGCu -3'
miRNA:   3'- -GUUGUGGuGC-CaGCGGG----UCCaGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 51106 0.66 0.625245
Target:  5'- cCGAUgcuGCCGCGGUgGCCCuugaugGGGguggccgacagacccUCGGGCu -3'
miRNA:   3'- -GUUG---UGGUGCCAgCGGG------UCC---------------AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 51550 0.72 0.28449
Target:  5'- gAGCGCCGCGGUcggugccacCGCCCuGaacUCGGACg -3'
miRNA:   3'- gUUGUGGUGCCA---------GCGGGuCc--AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 52013 0.66 0.642173
Target:  5'- cCGACGCCGgGG-CgGCCCcGGUC-GACa -3'
miRNA:   3'- -GUUGUGGUgCCaG-CGGGuCCAGcCUG- -5'
19295 3' -58.4 NC_004685.1 + 52517 0.66 0.631593
Target:  5'- gCAGCGCCGCGGcgaaCGCCgacgccauCAGGUucagcCGGAa -3'
miRNA:   3'- -GUUGUGGUGCCa---GCGG--------GUCCA-----GCCUg -5'
19295 3' -58.4 NC_004685.1 + 53150 0.71 0.320591
Target:  5'- cCAuCACCGCGGUCGCCuucggccgCAGGcUGGAg -3'
miRNA:   3'- -GUuGUGGUGCCAGCGG--------GUCCaGCCUg -5'
19295 3' -58.4 NC_004685.1 + 53975 0.67 0.547662
Target:  5'- cCAAC-UCGgGGUgGCCCAGGacUCGGGa -3'
miRNA:   3'- -GUUGuGGUgCCAgCGGGUCC--AGCCUg -5'
19295 3' -58.4 NC_004685.1 + 54076 0.66 0.642173
Target:  5'- --cCACCAUgucagGGUCGCCgGGGUUGuagucGACg -3'
miRNA:   3'- guuGUGGUG-----CCAGCGGgUCCAGC-----CUG- -5'
19295 3' -58.4 NC_004685.1 + 55191 1.08 0.000894
Target:  5'- uCAACACCACGGUCGCCCAGGUCGGACc -3'
miRNA:   3'- -GUUGUGGUGCCAGCGGGUCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 55318 0.69 0.457952
Target:  5'- uCGACACCACGGggGUgC-GGUgCGGGCa -3'
miRNA:   3'- -GUUGUGGUGCCagCGgGuCCA-GCCUG- -5'
19295 3' -58.4 NC_004685.1 + 55840 0.66 0.617842
Target:  5'- aCAGCACCGCGGUCagggugugggucuuGCCgCAcuGG-CGGGg -3'
miRNA:   3'- -GUUGUGGUGCCAG--------------CGG-GU--CCaGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.