miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19295 3' -58.4 NC_004685.1 + 58535 0.66 0.607277
Target:  5'- uCAGCGCCGgugaacccguUGGUggcgucggccaccgCGCCCAGGUCGa-- -3'
miRNA:   3'- -GUUGUGGU----------GCCA--------------GCGGGUCCAGCcug -5'
19295 3' -58.4 NC_004685.1 + 16130 0.68 0.517004
Target:  5'- ---gGCCACGGUCcCCUGGaGUCGGcCg -3'
miRNA:   3'- guugUGGUGCCAGcGGGUC-CAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 41562 0.67 0.568418
Target:  5'- uCGACgGCUGCGGUgggCGCCCccacgguggAGGUCGGcGCg -3'
miRNA:   3'- -GUUG-UGGUGCCA---GCGGG---------UCCAGCC-UG- -5'
19295 3' -58.4 NC_004685.1 + 57215 0.67 0.572594
Target:  5'- -cGCGuCCACGGUCGgccccucguugucgaCCCAGGggcgcaGGGCu -3'
miRNA:   3'- guUGU-GGUGCCAGC---------------GGGUCCag----CCUG- -5'
19295 3' -58.4 NC_004685.1 + 2877 0.67 0.578871
Target:  5'- cCggUGCgCACGG-CGCuggCCAGGaUCGGGCa -3'
miRNA:   3'- -GuuGUG-GUGCCaGCG---GGUCC-AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 56154 0.67 0.578871
Target:  5'- uCAAgACCGCGGUCGgugCCucGUCGGGg -3'
miRNA:   3'- -GUUgUGGUGCCAGCg--GGucCAGCCUg -5'
19295 3' -58.4 NC_004685.1 + 67953 0.67 0.578871
Target:  5'- aGGCGCCGCGGUgaaCGUCCcgacgGGGuguUCGGAa -3'
miRNA:   3'- gUUGUGGUGCCA---GCGGG-----UCC---AGCCUg -5'
19295 3' -58.4 NC_004685.1 + 28746 0.66 0.589365
Target:  5'- gCGACACCuCGGUCuCCCAGGaUCa--- -3'
miRNA:   3'- -GUUGUGGuGCCAGcGGGUCC-AGccug -5'
19295 3' -58.4 NC_004685.1 + 61590 0.66 0.599892
Target:  5'- gAACACC-CGGUCGgUCuuGGUCaGACc -3'
miRNA:   3'- gUUGUGGuGCCAGCgGGu-CCAGcCUG- -5'
19295 3' -58.4 NC_004685.1 + 48147 0.68 0.488041
Target:  5'- cCGGCACCACcccggcuggcccgauGUgGCCCGGcucGUCGGGCa -3'
miRNA:   3'- -GUUGUGGUGc--------------CAgCGGGUC---CAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 59617 0.68 0.487056
Target:  5'- ---aGCCACGG-C-CCCAGGUCGcGCa -3'
miRNA:   3'- guugUGGUGCCaGcGGGUCCAGCcUG- -5'
19295 3' -58.4 NC_004685.1 + 4276 0.68 0.487056
Target:  5'- gAAUcCCACGGUCGCUCagucucgacuugAGGUUGaGACu -3'
miRNA:   3'- gUUGuGGUGCCAGCGGG------------UCCAGC-CUG- -5'
19295 3' -58.4 NC_004685.1 + 51550 0.72 0.28449
Target:  5'- gAGCGCCGCGGUcggugccacCGCCCuGaacUCGGACg -3'
miRNA:   3'- gUUGUGGUGCCA---------GCGGGuCc--AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 36862 0.72 0.290743
Target:  5'- uCGACACCGCGG-CGUCCGGcaacaucGUCGGcCg -3'
miRNA:   3'- -GUUGUGGUGCCaGCGGGUC-------CAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 25823 0.71 0.335964
Target:  5'- uCAGCGCCGCGGgcucUCGCCC--GUCaGACa -3'
miRNA:   3'- -GUUGUGGUGCC----AGCGGGucCAGcCUG- -5'
19295 3' -58.4 NC_004685.1 + 441 0.71 0.335964
Target:  5'- ---aGCCGCGGUCGgUgAGGUCGG-Cg -3'
miRNA:   3'- guugUGGUGCCAGCgGgUCCAGCCuG- -5'
19295 3' -58.4 NC_004685.1 + 62497 0.71 0.360016
Target:  5'- gAACGCCACGGcCGggccuCCCGacGGcUCGGACa -3'
miRNA:   3'- gUUGUGGUGCCaGC-----GGGU--CC-AGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 56119 0.7 0.402702
Target:  5'- gGACAggucCCGcCGGUCGUUCGGGUugCGGACc -3'
miRNA:   3'- gUUGU----GGU-GCCAGCGGGUCCA--GCCUG- -5'
19295 3' -58.4 NC_004685.1 + 44737 0.69 0.420651
Target:  5'- gCGGCACCgGCG--UGCCCugguGGGUCGGACc -3'
miRNA:   3'- -GUUGUGG-UGCcaGCGGG----UCCAGCCUG- -5'
19295 3' -58.4 NC_004685.1 + 8232 0.69 0.467552
Target:  5'- aCAGCgucgGCUACGGcgacgcUGCCCAGGUCuacugGGACa -3'
miRNA:   3'- -GUUG----UGGUGCCa-----GCGGGUCCAG-----CCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.