miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19296 5' -59.5 NC_004685.1 + 49822 0.66 0.550424
Target:  5'- cGGGUUcgaggagauaaccUUGCCGacGAGCCgCCCACCg-- -3'
miRNA:   3'- -CCCGA-------------AGCGGUa-CUCGG-GGGUGGacu -5'
19296 5' -59.5 NC_004685.1 + 6426 0.66 0.530925
Target:  5'- cGGCggCGCCAaGGGCa-UCACCUGGc -3'
miRNA:   3'- cCCGaaGCGGUaCUCGggGGUGGACU- -5'
19296 5' -59.5 NC_004685.1 + 12943 0.67 0.510679
Target:  5'- aGGGUgaggUCGUCAgGAGCgauccUCUCGCCUGGg -3'
miRNA:   3'- -CCCGa---AGCGGUaCUCG-----GGGGUGGACU- -5'
19296 5' -59.5 NC_004685.1 + 9244 0.67 0.500676
Target:  5'- uGGGCcagCGCCG-GGGCcgccgaaaCCCCGCgUGAu -3'
miRNA:   3'- -CCCGaa-GCGGUaCUCG--------GGGGUGgACU- -5'
19296 5' -59.5 NC_004685.1 + 63636 0.67 0.500676
Target:  5'- aGGCguacCGCUcgGGGUacuuCUCCACCUGAa -3'
miRNA:   3'- cCCGaa--GCGGuaCUCG----GGGGUGGACU- -5'
19296 5' -59.5 NC_004685.1 + 8490 0.68 0.424164
Target:  5'- aGGCUgagCGCCGgugGGGUCCgCUACCgGAu -3'
miRNA:   3'- cCCGAa--GCGGUa--CUCGGG-GGUGGaCU- -5'
19296 5' -59.5 NC_004685.1 + 14539 0.68 0.415095
Target:  5'- uGGuGC-UCGaCAUGAGCCCCgACCg-- -3'
miRNA:   3'- -CC-CGaAGCgGUACUCGGGGgUGGacu -5'
19296 5' -59.5 NC_004685.1 + 3976 0.69 0.363271
Target:  5'- uGGCgUCGCUgguAUGAGCCUUCACCa-- -3'
miRNA:   3'- cCCGaAGCGG---UACUCGGGGGUGGacu -5'
19296 5' -59.5 NC_004685.1 + 57255 0.7 0.308712
Target:  5'- aGGGCUgcCGCCuucucggcgAUG-GCCCgCACCUGGu -3'
miRNA:   3'- -CCCGAa-GCGG---------UACuCGGGgGUGGACU- -5'
19296 5' -59.5 NC_004685.1 + 18058 0.71 0.287318
Target:  5'- aGGGCUUCaCCGUGGGCC---ACCUGGg -3'
miRNA:   3'- -CCCGAAGcGGUACUCGGgggUGGACU- -5'
19296 5' -59.5 NC_004685.1 + 54701 1.1 0.000408
Target:  5'- uGGGCUUCGCCAUGAGCCCCCACCUGAa -3'
miRNA:   3'- -CCCGAAGCGGUACUCGGGGGUGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.