miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19297 3' -61.5 NC_004685.1 + 54468 0.66 0.484273
Target:  5'- uCGGGa-CCGCCAgcgcacUCACCGCGuaauGcCGCCu -3'
miRNA:   3'- -GCUCgcGGCGGU------AGUGGCGC----CaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 2584 0.66 0.484273
Target:  5'- cCGAGCGUCGCaacgacaGCCucgagGUGGUCuGCCu -3'
miRNA:   3'- -GCUCGCGGCGguag---UGG-----CGCCAG-CGG- -5'
19297 3' -61.5 NC_004685.1 + 29549 0.66 0.484273
Target:  5'- cCGAGgacauCGCCGCCAUgACCGacaacuucCGCCa -3'
miRNA:   3'- -GCUC-----GCGGCGGUAgUGGCgcca----GCGG- -5'
19297 3' -61.5 NC_004685.1 + 52913 0.66 0.484273
Target:  5'- cCGAGCGCauaGCCcagGUCuCCGCugacGGUgGUCa -3'
miRNA:   3'- -GCUCGCGg--CGG---UAGuGGCG----CCAgCGG- -5'
19297 3' -61.5 NC_004685.1 + 49239 0.66 0.484273
Target:  5'- cCGAaCGCagCGCCAUCAgCGCGcacaccUCGCCc -3'
miRNA:   3'- -GCUcGCG--GCGGUAGUgGCGCc-----AGCGG- -5'
19297 3' -61.5 NC_004685.1 + 28053 0.66 0.484273
Target:  5'- -aGGCGCgGgCCAagGCUGaggcugaGGUCGCCg -3'
miRNA:   3'- gcUCGCGgC-GGUagUGGCg------CCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 26019 0.66 0.483319
Target:  5'- cCGAGCGCgGgCCggagaacGUCuucgagccaaACCG-GGUCGCCu -3'
miRNA:   3'- -GCUCGCGgC-GG-------UAG----------UGGCgCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 16144 0.66 0.474769
Target:  5'- gGAGUcgGCCGCgCcgCGCCa-GGUCGUCa -3'
miRNA:   3'- gCUCG--CGGCG-GuaGUGGcgCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 32821 0.66 0.474769
Target:  5'- aCGA-UGuuGCCGgaCGCCGCGGUgucgaGCCg -3'
miRNA:   3'- -GCUcGCggCGGUa-GUGGCGCCAg----CGG- -5'
19297 3' -61.5 NC_004685.1 + 17490 0.66 0.474769
Target:  5'- uCGGGUGUagCGCCA-CGCUGCGGggaGCa -3'
miRNA:   3'- -GCUCGCG--GCGGUaGUGGCGCCag-CGg -5'
19297 3' -61.5 NC_004685.1 + 13955 0.66 0.474769
Target:  5'- -cGGCGUCaucguGCCGaUACCGCGGUgCGCg -3'
miRNA:   3'- gcUCGCGG-----CGGUaGUGGCGCCA-GCGg -5'
19297 3' -61.5 NC_004685.1 + 5964 0.66 0.474769
Target:  5'- gGAGCGCCGaCUAcgauccgCGCgUGCGGaCGCUg -3'
miRNA:   3'- gCUCGCGGC-GGUa------GUG-GCGCCaGCGG- -5'
19297 3' -61.5 NC_004685.1 + 1808 0.66 0.473824
Target:  5'- -cAGCGCgaCGCCGgcgCGCCGCGaucccauGUCGaCCa -3'
miRNA:   3'- gcUCGCG--GCGGUa--GUGGCGC-------CAGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 62874 0.66 0.470994
Target:  5'- gGGGCggugcgaaguaGCCGCCgGUCACCGggggcgggguguaGGUgGCCg -3'
miRNA:   3'- gCUCG-----------CGGCGG-UAGUGGCg------------CCAgCGG- -5'
19297 3' -61.5 NC_004685.1 + 49869 0.66 0.465359
Target:  5'- uGGGgGCCGggauuuCCAgCGCaGCGGUCGCg -3'
miRNA:   3'- gCUCgCGGC------GGUaGUGgCGCCAGCGg -5'
19297 3' -61.5 NC_004685.1 + 45534 0.66 0.465359
Target:  5'- uGAGCGCgGUgAUCA-CGCGG--GCCa -3'
miRNA:   3'- gCUCGCGgCGgUAGUgGCGCCagCGG- -5'
19297 3' -61.5 NC_004685.1 + 26615 0.66 0.465359
Target:  5'- uGuGCGCCcaGCCG--ACCGCGGcgagcacCGCCg -3'
miRNA:   3'- gCuCGCGG--CGGUagUGGCGCCa------GCGG- -5'
19297 3' -61.5 NC_004685.1 + 8494 0.66 0.464424
Target:  5'- uGAGCGCCGgUgggGUCcgcuaccggauggGCCGCaGUCGaCCa -3'
miRNA:   3'- gCUCGCGGCgG---UAG-------------UGGCGcCAGC-GG- -5'
19297 3' -61.5 NC_004685.1 + 29709 0.66 0.462556
Target:  5'- cCGGuGCGCCagggucagggucugGCCcgaGgUGCGGUCGCCg -3'
miRNA:   3'- -GCU-CGCGG--------------CGGuagUgGCGCCAGCGG- -5'
19297 3' -61.5 NC_004685.1 + 1364 0.66 0.459761
Target:  5'- gGGGCGCaCGCaCAcucggacccgcacacUCGgacCCGCGGcgCGCCu -3'
miRNA:   3'- gCUCGCG-GCG-GU---------------AGU---GGCGCCa-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.