miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19298 3' -53.3 NC_004685.1 + 15376 0.66 0.86366
Target:  5'- cCGAgaacacaaucuGGGAGUCGAAGgggaaCGGcUACCGUg -3'
miRNA:   3'- aGCU-----------UCCUCAGCUUCg----GCUaGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 34700 0.66 0.86366
Target:  5'- cUGGAGGGGUCGGAcCCGcgcaacggGUUGCCGa -3'
miRNA:   3'- aGCUUCCUCAGCUUcGGC--------UAGUGGCg -5'
19298 3' -53.3 NC_004685.1 + 48475 0.66 0.86366
Target:  5'- cCGAcGGcGAGgaGAAGUCGAUCGCCuGCc -3'
miRNA:   3'- aGCU-UC-CUCagCUUCGGCUAGUGG-CG- -5'
19298 3' -53.3 NC_004685.1 + 899 0.66 0.86366
Target:  5'- gUCGuGGGugcAGUCGGAucGgUGAUCGCCGUu -3'
miRNA:   3'- -AGCuUCC---UCAGCUU--CgGCUAGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 17931 0.67 0.855523
Target:  5'- aCGu-GGAGUaucCGAucuGGCCGGaguucgagUCACCGCc -3'
miRNA:   3'- aGCuuCCUCA---GCU---UCGGCU--------AGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 62872 0.67 0.855523
Target:  5'- cUGggGcGGUgCGAAguagccGCCGGUCACCGg -3'
miRNA:   3'- aGCuuCcUCA-GCUU------CGGCUAGUGGCg -5'
19298 3' -53.3 NC_004685.1 + 30509 0.67 0.855523
Target:  5'- --uGAGGAucGUCGu-GCCGGugaaguguUCACCGCg -3'
miRNA:   3'- agcUUCCU--CAGCuuCGGCU--------AGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 13972 0.67 0.855523
Target:  5'- cCGAGcGGGUCGc-GCCGuUCAuCCGCa -3'
miRNA:   3'- aGCUUcCUCAGCuuCGGCuAGU-GGCG- -5'
19298 3' -53.3 NC_004685.1 + 65277 0.67 0.855523
Target:  5'- gUCGggGGuGUgGcAGCUGcGUCcgugGCCGCa -3'
miRNA:   3'- -AGCuuCCuCAgCuUCGGC-UAG----UGGCG- -5'
19298 3' -53.3 NC_004685.1 + 20166 0.67 0.854697
Target:  5'- aUGcAGGGGUCGAauacGGCUgccccgaGGUgGCCGCa -3'
miRNA:   3'- aGCuUCCUCAGCU----UCGG-------CUAgUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 20024 0.67 0.84716
Target:  5'- gUCGGGcGAcccGcCGggGCgGAUCAUCGCg -3'
miRNA:   3'- -AGCUUcCU---CaGCuuCGgCUAGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 1799 0.67 0.84716
Target:  5'- uUCGAcGGccAGcgCGAcGCCGGcgCGCCGCg -3'
miRNA:   3'- -AGCUuCC--UCa-GCUuCGGCUa-GUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 67085 0.67 0.84716
Target:  5'- gCGAAGGcAGaccaccUCGAGGCUG-UCGuuGCg -3'
miRNA:   3'- aGCUUCC-UC------AGCUUCGGCuAGUggCG- -5'
19298 3' -53.3 NC_004685.1 + 1716 0.67 0.84716
Target:  5'- gCGAAugcGGGGUUGAcGCgGAgcUUGCCGCg -3'
miRNA:   3'- aGCUU---CCUCAGCUuCGgCU--AGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 7484 0.67 0.84716
Target:  5'- -aGAGGuGaAGUCGAAGaaGGUCACCu- -3'
miRNA:   3'- agCUUC-C-UCAGCUUCggCUAGUGGcg -5'
19298 3' -53.3 NC_004685.1 + 61320 0.67 0.84716
Target:  5'- cUCGGaccacugcAGGAuGUCGggGUaggaCGG-CACCGCg -3'
miRNA:   3'- -AGCU--------UCCU-CAGCuuCG----GCUaGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 52962 0.67 0.84716
Target:  5'- gUCGGuguAGGcGGUCGGGucccagucGCCGGUCAUCGa -3'
miRNA:   3'- -AGCU---UCC-UCAGCUU--------CGGCUAGUGGCg -5'
19298 3' -53.3 NC_004685.1 + 38599 0.67 0.838576
Target:  5'- cCGA---AGUCGgcGUCGAgCGCCGCa -3'
miRNA:   3'- aGCUuccUCAGCuuCGGCUaGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 31820 0.67 0.829782
Target:  5'- ----cGGcAGUCGgcGUCGAUC-CCGCu -3'
miRNA:   3'- agcuuCC-UCAGCuuCGGCUAGuGGCG- -5'
19298 3' -53.3 NC_004685.1 + 7998 0.67 0.829782
Target:  5'- aUC-AAGGGGUUcaAGGUCGggCGCCGCa -3'
miRNA:   3'- -AGcUUCCUCAGc-UUCGGCuaGUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.