miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19298 5' -58.1 NC_004685.1 + 1875 0.66 0.634925
Target:  5'- aGGuUGAGGAUG-GCGUCGGuCagGCCg -3'
miRNA:   3'- gCC-GCUCCUACgCGCAGCU-GagUGGg -5'
19298 5' -58.1 NC_004685.1 + 58541 0.66 0.634925
Target:  5'- cCGGUGAacccguuGGUG-GCGUCGGCcaccgCGCCCa -3'
miRNA:   3'- -GCCGCUc------CUACgCGCAGCUGa----GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 44617 0.66 0.634925
Target:  5'- gCGGCGAGc-UGCGCGaCGGCcuguUCAUCUu -3'
miRNA:   3'- -GCCGCUCcuACGCGCaGCUG----AGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 45739 0.66 0.634925
Target:  5'- aCGGCagcgggucgccGGGGcgGCGCGUguucgcugcgCGGuacacCUCGCCCa -3'
miRNA:   3'- -GCCG-----------CUCCuaCGCGCA----------GCU-----GAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 56030 0.67 0.62444
Target:  5'- cCGGCGAugucggaagGGAUGacuagGCGUCGGgUgACCUc -3'
miRNA:   3'- -GCCGCU---------CCUACg----CGCAGCUgAgUGGG- -5'
19298 5' -58.1 NC_004685.1 + 37468 0.67 0.62444
Target:  5'- uCGGCGuucuucgGCgGCGUCGACUgggagaaccCGCCCa -3'
miRNA:   3'- -GCCGCuccua--CG-CGCAGCUGA---------GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 34437 0.67 0.62444
Target:  5'- aGGCGcGGGUGaUGuCGUCGAUgacagCGCCg -3'
miRNA:   3'- gCCGCuCCUAC-GC-GCAGCUGa----GUGGg -5'
19298 5' -58.1 NC_004685.1 + 38701 0.67 0.62444
Target:  5'- uCGGCcuccuucAGGcUGCGCaUCGACUcCAUCCa -3'
miRNA:   3'- -GCCGc------UCCuACGCGcAGCUGA-GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 47490 0.67 0.623392
Target:  5'- aCGGUGAcguugaggccuuuGGAUcgcaGCGCGUgGAC-CACUCg -3'
miRNA:   3'- -GCCGCU-------------CCUA----CGCGCAgCUGaGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 55170 0.67 0.618151
Target:  5'- -aGCGcGGc-GCGCGUCGGCgcgucaacaccacggUCGCCCa -3'
miRNA:   3'- gcCGCuCCuaCGCGCAGCUG---------------AGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 29256 0.67 0.613961
Target:  5'- gGGCGGGGAcagguaguUGcCG-GUCGGC-CACUCg -3'
miRNA:   3'- gCCGCUCCU--------AC-GCgCAGCUGaGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 45896 0.67 0.613961
Target:  5'- aGGCcaucGAGGAucgcUGCGC-UCGGCgcuGCCCg -3'
miRNA:   3'- gCCG----CUCCU----ACGCGcAGCUGag-UGGG- -5'
19298 5' -58.1 NC_004685.1 + 24352 0.67 0.60768
Target:  5'- gCGGCGAuGGUGCGCGggaUCGGCaUCugggacagcucgauuGCCUg -3'
miRNA:   3'- -GCCGCUcCUACGCGC---AGCUG-AG---------------UGGG- -5'
19298 5' -58.1 NC_004685.1 + 16550 0.67 0.603496
Target:  5'- gCGGUGAuGGcgGCGC-UCGAC-CGCUg -3'
miRNA:   3'- -GCCGCU-CCuaCGCGcAGCUGaGUGGg -5'
19298 5' -58.1 NC_004685.1 + 17422 0.67 0.603496
Target:  5'- cCGGCagGAGGcUGCGCGaugaaggCGGCcCugCCg -3'
miRNA:   3'- -GCCG--CUCCuACGCGCa------GCUGaGugGG- -5'
19298 5' -58.1 NC_004685.1 + 365 0.67 0.603496
Target:  5'- gCGGCGAGcGGUcaccaGCGCaUCGACagcCGCCUc -3'
miRNA:   3'- -GCCGCUC-CUA-----CGCGcAGCUGa--GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 45077 0.67 0.597228
Target:  5'- -cGCGAGGuggGCGCGgUguggccggacuacggCGGCUCACCg -3'
miRNA:   3'- gcCGCUCCua-CGCGC-A---------------GCUGAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 68743 0.67 0.593054
Target:  5'- aGGCGcgcGGAUGCGgGUUGAC-CAgCa -3'
miRNA:   3'- gCCGCu--CCUACGCgCAGCUGaGUgGg -5'
19298 5' -58.1 NC_004685.1 + 31074 0.67 0.582642
Target:  5'- uCGGCGAcauGGGUGCgGCGcUCGAC--GCCg -3'
miRNA:   3'- -GCCGCU---CCUACG-CGC-AGCUGagUGGg -5'
19298 5' -58.1 NC_004685.1 + 59583 0.67 0.582642
Target:  5'- gCGGCGGcGGGUGaGCGcacCGGCUgCGCCUu -3'
miRNA:   3'- -GCCGCU-CCUACgCGCa--GCUGA-GUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.