miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19299 3' -56.3 NC_004685.1 + 65446 0.66 0.725493
Target:  5'- --cGCGGUggaGAAGcUGgccgaaCGCGUCGCCGg -3'
miRNA:   3'- ugaCGCCAa--CUUC-AC------GCGCAGCGGUg -5'
19299 3' -56.3 NC_004685.1 + 18831 0.66 0.714988
Target:  5'- gGCUGCGGcUGuacAGgcagGCGCGcacCGCCGa -3'
miRNA:   3'- -UGACGCCaACu--UCa---CGCGCa--GCGGUg -5'
19299 3' -56.3 NC_004685.1 + 50883 0.66 0.693752
Target:  5'- --gGCGGUUGc---GCGCGgUGCCGCg -3'
miRNA:   3'- ugaCGCCAACuucaCGCGCaGCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 32240 0.66 0.693752
Target:  5'- gACaGCGcGUUGA---GCGCGUUGCCGa -3'
miRNA:   3'- -UGaCGC-CAACUucaCGCGCAGCGGUg -5'
19299 3' -56.3 NC_004685.1 + 35712 0.66 0.683042
Target:  5'- gACUGCGuUUGcgugGCGuUGUCGCCGCc -3'
miRNA:   3'- -UGACGCcAACuucaCGC-GCAGCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 68368 0.66 0.683042
Target:  5'- --cGCGGguccGAGUGUGCGUgCGCCcCg -3'
miRNA:   3'- ugaCGCCaac-UUCACGCGCA-GCGGuG- -5'
19299 3' -56.3 NC_004685.1 + 41437 0.67 0.639833
Target:  5'- cGCUGcCGGUUGAcGGUGCGgGUgaGCUg- -3'
miRNA:   3'- -UGAC-GCCAACU-UCACGCgCAg-CGGug -5'
19299 3' -56.3 NC_004685.1 + 41929 0.67 0.639833
Target:  5'- --gGCGGUUcuucugGAGGUGCGCGUagaUGUCAa -3'
miRNA:   3'- ugaCGCCAA------CUUCACGCGCA---GCGGUg -5'
19299 3' -56.3 NC_004685.1 + 58997 0.67 0.618149
Target:  5'- --cGCGGcuccgacUGGuAGUGCGCGcccCGCCACa -3'
miRNA:   3'- ugaCGCCa------ACU-UCACGCGCa--GCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 21302 0.68 0.607319
Target:  5'- aGCUGUGGUggcgcggcGAGGcgaUGCGCuUCGUCACc -3'
miRNA:   3'- -UGACGCCAa-------CUUC---ACGCGcAGCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 54013 0.68 0.607319
Target:  5'- uGCUGcCGGUggaugugccaUGcAGGUGUGCGgggaUGCCGCg -3'
miRNA:   3'- -UGAC-GCCA----------AC-UUCACGCGCa---GCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 48089 0.68 0.596511
Target:  5'- cGCgGCGGUcGAgaacaGGUagGCGUCGCCGCu -3'
miRNA:   3'- -UGaCGCCAaCU-----UCAcgCGCAGCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 47737 0.68 0.585732
Target:  5'- --aGCGGaUGAuGGUGCGgGaUGCCACg -3'
miRNA:   3'- ugaCGCCaACU-UCACGCgCaGCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 7494 0.68 0.585732
Target:  5'- -aUGUGGgugGAAG-GCGCGg-GCCGCa -3'
miRNA:   3'- ugACGCCaa-CUUCaCGCGCagCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 68319 0.68 0.564294
Target:  5'- -gUGCGGguccGAGUGUGCGUgCGCCcCg -3'
miRNA:   3'- ugACGCCaac-UUCACGCGCA-GCGGuG- -5'
19299 3' -56.3 NC_004685.1 + 14954 0.68 0.564294
Target:  5'- -gUGCGGcgUGAGuucGUGCGUCGCUGCu -3'
miRNA:   3'- ugACGCCa-ACUUca-CGCGCAGCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 20433 0.69 0.522114
Target:  5'- --gGCGGgcGAGGUGUGCG-CGCUg- -3'
miRNA:   3'- ugaCGCCaaCUUCACGCGCaGCGGug -5'
19299 3' -56.3 NC_004685.1 + 2655 0.69 0.522114
Target:  5'- --cGUGGU---AGUGCGgGUCGUCGCg -3'
miRNA:   3'- ugaCGCCAacuUCACGCgCAGCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 43040 0.69 0.491295
Target:  5'- gGCUGUGGUgugcucgucGGUGCgGCGgugcUCGCCGCg -3'
miRNA:   3'- -UGACGCCAacu------UCACG-CGC----AGCGGUG- -5'
19299 3' -56.3 NC_004685.1 + 59865 0.74 0.256273
Target:  5'- -aUGCGGUaGguGUGCGCGggaccaccUCGCCGCg -3'
miRNA:   3'- ugACGCCAaCuuCACGCGC--------AGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.