miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19299 5' -56 NC_004685.1 + 28452 0.66 0.751445
Target:  5'- gCGCCGCUGGCGauGUCGuccaggaaCUCGUCGg- -3'
miRNA:   3'- aGCGGUGACUGU--UAGUg-------GAGCGGCga -5'
19299 5' -56 NC_004685.1 + 59588 0.66 0.751445
Target:  5'- gUCGCCGCUcaucGACug-CACCcgCGCCcgGCg -3'
miRNA:   3'- -AGCGGUGA----CUGuuaGUGGa-GCGG--CGa -5'
19299 5' -56 NC_004685.1 + 54735 0.66 0.751445
Target:  5'- aCGCCACgaacucACGccgCACCgccaUCGCCGCg -3'
miRNA:   3'- aGCGGUGac----UGUua-GUGG----AGCGGCGa -5'
19299 5' -56 NC_004685.1 + 9782 0.66 0.751445
Target:  5'- -aGCgGCUGGgGuUCGCCUaccgcggcCGCCGCg -3'
miRNA:   3'- agCGgUGACUgUuAGUGGA--------GCGGCGa -5'
19299 5' -56 NC_004685.1 + 45768 0.66 0.74121
Target:  5'- uUCGCUGC--GCGGUaCACCUCGCCcaGCc -3'
miRNA:   3'- -AGCGGUGacUGUUA-GUGGAGCGG--CGa -5'
19299 5' -56 NC_004685.1 + 39213 0.66 0.74121
Target:  5'- gCGCCGcCUGGCGGcgGCUUCGgCGCc -3'
miRNA:   3'- aGCGGU-GACUGUUagUGGAGCgGCGa -5'
19299 5' -56 NC_004685.1 + 10196 0.66 0.74121
Target:  5'- cUGuCCGCUGGCA---ACC-CGCCGCc -3'
miRNA:   3'- aGC-GGUGACUGUuagUGGaGCGGCGa -5'
19299 5' -56 NC_004685.1 + 66619 0.66 0.74121
Target:  5'- gUCGaUCACUGuccaGGUCgauACCUUGCCGCc -3'
miRNA:   3'- -AGC-GGUGACug--UUAG---UGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 20863 0.66 0.730868
Target:  5'- -aGCgCGCagGGCAA-CGCCagCGCCGCUg -3'
miRNA:   3'- agCG-GUGa-CUGUUaGUGGa-GCGGCGA- -5'
19299 5' -56 NC_004685.1 + 33398 0.66 0.730868
Target:  5'- aCGgCGa-GAUGAUCGCCgCGCCGCa -3'
miRNA:   3'- aGCgGUgaCUGUUAGUGGaGCGGCGa -5'
19299 5' -56 NC_004685.1 + 10102 0.66 0.730868
Target:  5'- -aGCCGgUG-CGcUCACC-CGCCGCc -3'
miRNA:   3'- agCGGUgACuGUuAGUGGaGCGGCGa -5'
19299 5' -56 NC_004685.1 + 56586 0.66 0.730868
Target:  5'- gUCGCCAC----GAUCAUCUCGUCGgUg -3'
miRNA:   3'- -AGCGGUGacugUUAGUGGAGCGGCgA- -5'
19299 5' -56 NC_004685.1 + 50344 0.66 0.730868
Target:  5'- uUCGCCGC-GGCg--CAUCUUGCCGa- -3'
miRNA:   3'- -AGCGGUGaCUGuuaGUGGAGCGGCga -5'
19299 5' -56 NC_004685.1 + 6580 0.66 0.727747
Target:  5'- cUCGCCACcGACGAgcgcgaccccagcgaACCugacgacgacggUCGCCGCa -3'
miRNA:   3'- -AGCGGUGaCUGUUag-------------UGG------------AGCGGCGa -5'
19299 5' -56 NC_004685.1 + 23818 0.66 0.720432
Target:  5'- cCGUCGCggUGACGAUCACCggcaGCaaCGCg -3'
miRNA:   3'- aGCGGUG--ACUGUUAGUGGag--CG--GCGa -5'
19299 5' -56 NC_004685.1 + 57876 0.66 0.720432
Target:  5'- aCGCCGcCUGGCGuugaacucuUCgACCaugCGCCGCg -3'
miRNA:   3'- aGCGGU-GACUGUu--------AG-UGGa--GCGGCGa -5'
19299 5' -56 NC_004685.1 + 57257 0.66 0.720432
Target:  5'- -gGCgGCgGGCGGUCACa--GCCGCUc -3'
miRNA:   3'- agCGgUGaCUGUUAGUGgagCGGCGA- -5'
19299 5' -56 NC_004685.1 + 43636 0.66 0.720432
Target:  5'- -gGCCGacaGCGGUCGCCgUCGCUGCc -3'
miRNA:   3'- agCGGUgacUGUUAGUGG-AGCGGCGa -5'
19299 5' -56 NC_004685.1 + 23062 0.66 0.719383
Target:  5'- cCGCCAUgugaagguaGACGAUCACCUgaaacagggugacCGCCucGCUg -3'
miRNA:   3'- aGCGGUGa--------CUGUUAGUGGA-------------GCGG--CGA- -5'
19299 5' -56 NC_004685.1 + 55056 0.66 0.714128
Target:  5'- gUCGCCGCgGugGuuuccAUCGCCaucagcagcaccuucUCGCCGUc -3'
miRNA:   3'- -AGCGGUGaCugU-----UAGUGG---------------AGCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.