miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19299 5' -56 NC_004685.1 + 51387 1.09 0.001161
Target:  5'- gUCGCCACUGACAAUCACCUCGCCGCUg -3'
miRNA:   3'- -AGCGGUGACUGUUAGUGGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 36283 0.78 0.176322
Target:  5'- gCGCUGCggcgcGGCGAUCAUCUCGCCGUUu -3'
miRNA:   3'- aGCGGUGa----CUGUUAGUGGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 1381 0.77 0.190931
Target:  5'- cCGCCgguGCUGGucuCGAUCGCCUCGUCGCc -3'
miRNA:   3'- aGCGG---UGACU---GUUAGUGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 48365 0.76 0.206592
Target:  5'- gUGCgGgUGACGAagcgcaUCGCCUCGCCGCg -3'
miRNA:   3'- aGCGgUgACUGUU------AGUGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 65838 0.76 0.22919
Target:  5'- -aGgCACUGGCc--CACCUCGCCGCg -3'
miRNA:   3'- agCgGUGACUGuuaGUGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 53415 0.76 0.233953
Target:  5'- gUCGCCGCccucuucgaagcccuUGGCGAUgucggcggucggcacUACCUCGCCGCa -3'
miRNA:   3'- -AGCGGUG---------------ACUGUUA---------------GUGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 67768 0.75 0.247481
Target:  5'- gUCGCCGCUGACGccaACCgcgGCCGCa -3'
miRNA:   3'- -AGCGGUGACUGUuagUGGag-CGGCGa -5'
19299 5' -56 NC_004685.1 + 57812 0.75 0.253841
Target:  5'- cUCGaugaGCUcGACAAUCGCCUCGCCGa- -3'
miRNA:   3'- -AGCgg--UGA-CUGUUAGUGGAGCGGCga -5'
19299 5' -56 NC_004685.1 + 59449 0.75 0.253841
Target:  5'- -gGCCAgucgaUGACGGUCAgCUCGCCGUUg -3'
miRNA:   3'- agCGGUg----ACUGUUAGUgGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 50783 0.74 0.287668
Target:  5'- aUGUCcCUGGCuucGUCAcCCUCGCCGCUg -3'
miRNA:   3'- aGCGGuGACUGu--UAGU-GGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 65900 0.74 0.302161
Target:  5'- gUGCCGCcgUGACGAUCA--UCGCCGCa -3'
miRNA:   3'- aGCGGUG--ACUGUUAGUggAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 8843 0.73 0.332815
Target:  5'- gUGCgGCaGGCGGUCACCgcgggugacccgUCGCCGCUg -3'
miRNA:   3'- aGCGgUGaCUGUUAGUGG------------AGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 21200 0.73 0.357265
Target:  5'- gUCGCgGCaGGCGAUCGacuucuCCUCGCCGUc -3'
miRNA:   3'- -AGCGgUGaCUGUUAGU------GGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 53741 0.72 0.374252
Target:  5'- gCGCCAUUGGCAGcacgaaCGCUUCGCCGa- -3'
miRNA:   3'- aGCGGUGACUGUUa-----GUGGAGCGGCga -5'
19299 5' -56 NC_004685.1 + 57704 0.72 0.400739
Target:  5'- gUCG-CACUGGCAGUgCACCguaacccgaCGCCGCg -3'
miRNA:   3'- -AGCgGUGACUGUUA-GUGGa--------GCGGCGa -5'
19299 5' -56 NC_004685.1 + 53147 0.72 0.400739
Target:  5'- cCGCCAUcaccGCGGUCGCCUUcgGCCGCa -3'
miRNA:   3'- aGCGGUGac--UGUUAGUGGAG--CGGCGa -5'
19299 5' -56 NC_004685.1 + 43340 0.71 0.40983
Target:  5'- cUCG-UACUcGGCcAUCGCCUCGUCGCUg -3'
miRNA:   3'- -AGCgGUGA-CUGuUAGUGGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 49336 0.71 0.419048
Target:  5'- aCGCCGCggcgGGCAG-CGgUUCGCCGCc -3'
miRNA:   3'- aGCGGUGa---CUGUUaGUgGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 36598 0.71 0.419048
Target:  5'- aCGCCGaggacCUGGCGggUGCgCUCGCCGCg -3'
miRNA:   3'- aGCGGU-----GACUGUuaGUG-GAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 61951 0.71 0.428391
Target:  5'- aCGUC-CUGGCugcggGCCUCGCCGCa -3'
miRNA:   3'- aGCGGuGACUGuuag-UGGAGCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.