miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19299 5' -56 NC_004685.1 + 22848 0.66 0.70991
Target:  5'- aUCGCCGgUGAauugcaGCCacgCGCCGCa -3'
miRNA:   3'- -AGCGGUgACUguuag-UGGa--GCGGCGa -5'
19299 5' -56 NC_004685.1 + 42095 0.66 0.70991
Target:  5'- -aGCCACgUGAaGAUCaACUUCcGCCGCa -3'
miRNA:   3'- agCGGUG-ACUgUUAG-UGGAG-CGGCGa -5'
19299 5' -56 NC_004685.1 + 253 0.66 0.699315
Target:  5'- cCGgCGgUGACAAUCGCgUCcaGCUGCUc -3'
miRNA:   3'- aGCgGUgACUGUUAGUGgAG--CGGCGA- -5'
19299 5' -56 NC_004685.1 + 42678 0.66 0.699315
Target:  5'- -aGCCGCU-ACGGUCGugUCGCCGUc -3'
miRNA:   3'- agCGGUGAcUGUUAGUggAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 62759 0.66 0.699315
Target:  5'- -gGCCACggugGGCugaggCACCUgCGUCGCa -3'
miRNA:   3'- agCGGUGa---CUGuua--GUGGA-GCGGCGa -5'
19299 5' -56 NC_004685.1 + 61738 0.66 0.699315
Target:  5'- -gGCCAgccgGAUGAUCGCCgUCGCCaGCg -3'
miRNA:   3'- agCGGUga--CUGUUAGUGG-AGCGG-CGa -5'
19299 5' -56 NC_004685.1 + 33385 0.66 0.699315
Target:  5'- gUGCCACcucgaUGACGAgguaCugCUUGCCGUc -3'
miRNA:   3'- aGCGGUG-----ACUGUUa---GugGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 40592 0.67 0.688656
Target:  5'- gUCGCCAUcuUGAUggU-GCCgaaCGCCGCc -3'
miRNA:   3'- -AGCGGUG--ACUGuuAgUGGa--GCGGCGa -5'
19299 5' -56 NC_004685.1 + 60662 0.67 0.688656
Target:  5'- aCGaCCGC-GACGAaCACCUCGCgcaGCa -3'
miRNA:   3'- aGC-GGUGaCUGUUaGUGGAGCGg--CGa -5'
19299 5' -56 NC_004685.1 + 38723 0.67 0.688656
Target:  5'- cUGCC-CUGuCGAUgaGCCgaUCGCCGCUg -3'
miRNA:   3'- aGCGGuGACuGUUAg-UGG--AGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 60215 0.67 0.687587
Target:  5'- aCGCCGCcGACAAUCGCgggcagcgugauaCUCgGCgGCa -3'
miRNA:   3'- aGCGGUGaCUGUUAGUG-------------GAG-CGgCGa -5'
19299 5' -56 NC_004685.1 + 32810 0.67 0.677945
Target:  5'- -gGCCGCggccGACGauGUUGCCggaCGCCGCg -3'
miRNA:   3'- agCGGUGa---CUGU--UAGUGGa--GCGGCGa -5'
19299 5' -56 NC_004685.1 + 59860 0.67 0.671498
Target:  5'- gCGUCAU--GCGGUaggugugcgcgggacCACCUCGCCGCg -3'
miRNA:   3'- aGCGGUGacUGUUA---------------GUGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 69550 0.67 0.667192
Target:  5'- -gGCCACcccGGCAGccgCGCCcgcgccggUCGCCGCUa -3'
miRNA:   3'- agCGGUGa--CUGUUa--GUGG--------AGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 11147 0.67 0.667192
Target:  5'- aCGCCACcaACGGguUCACCggcgcugagaUCGCCGCg -3'
miRNA:   3'- aGCGGUGacUGUU--AGUGG----------AGCGGCGa -5'
19299 5' -56 NC_004685.1 + 24294 0.67 0.656407
Target:  5'- -gGCCAUUccaucGACGggCACCUCGUgGCg -3'
miRNA:   3'- agCGGUGA-----CUGUuaGUGGAGCGgCGa -5'
19299 5' -56 NC_004685.1 + 31154 0.67 0.656407
Target:  5'- uUCGUCGC-GACGcUCGCCgccgCGCCGg- -3'
miRNA:   3'- -AGCGGUGaCUGUuAGUGGa---GCGGCga -5'
19299 5' -56 NC_004685.1 + 57619 0.67 0.645601
Target:  5'- -gGCCGC-GACGAUCuucuugcacGCCUCgcggGCCGCg -3'
miRNA:   3'- agCGGUGaCUGUUAG---------UGGAG----CGGCGa -5'
19299 5' -56 NC_004685.1 + 52919 0.67 0.645601
Target:  5'- gCGCC-UUGGCAgugAUCGCCUCggacaGCUGCUc -3'
miRNA:   3'- aGCGGuGACUGU---UAGUGGAG-----CGGCGA- -5'
19299 5' -56 NC_004685.1 + 33716 0.68 0.634783
Target:  5'- cUUGCCGa-GGguGUaCACCUCGCCGUUg -3'
miRNA:   3'- -AGCGGUgaCUguUA-GUGGAGCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.