miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19299 5' -56 NC_004685.1 + 253 0.66 0.699315
Target:  5'- cCGgCGgUGACAAUCGCgUCcaGCUGCUc -3'
miRNA:   3'- aGCgGUgACUGUUAGUGgAG--CGGCGA- -5'
19299 5' -56 NC_004685.1 + 1381 0.77 0.190931
Target:  5'- cCGCCgguGCUGGucuCGAUCGCCUCGUCGCc -3'
miRNA:   3'- aGCGG---UGACU---GUUAGUGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 4393 0.71 0.457137
Target:  5'- cCGCCAgccUUG-UAGUCGCCggUCGCCGCg -3'
miRNA:   3'- aGCGGU---GACuGUUAGUGG--AGCGGCGa -5'
19299 5' -56 NC_004685.1 + 6580 0.66 0.727747
Target:  5'- cUCGCCACcGACGAgcgcgaccccagcgaACCugacgacgacggUCGCCGCa -3'
miRNA:   3'- -AGCGGUGaCUGUUag-------------UGG------------AGCGGCGa -5'
19299 5' -56 NC_004685.1 + 8843 0.73 0.332815
Target:  5'- gUGCgGCaGGCGGUCACCgcgggugacccgUCGCCGCUg -3'
miRNA:   3'- aGCGgUGaCUGUUAGUGG------------AGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 9782 0.66 0.751445
Target:  5'- -aGCgGCUGGgGuUCGCCUaccgcggcCGCCGCg -3'
miRNA:   3'- agCGgUGACUgUuAGUGGA--------GCGGCGa -5'
19299 5' -56 NC_004685.1 + 10102 0.66 0.730868
Target:  5'- -aGCCGgUG-CGcUCACC-CGCCGCc -3'
miRNA:   3'- agCGGUgACuGUuAGUGGaGCGGCGa -5'
19299 5' -56 NC_004685.1 + 10196 0.66 0.74121
Target:  5'- cUGuCCGCUGGCA---ACC-CGCCGCc -3'
miRNA:   3'- aGC-GGUGACUGUuagUGGaGCGGCGa -5'
19299 5' -56 NC_004685.1 + 11147 0.67 0.667192
Target:  5'- aCGCCACcaACGGguUCACCggcgcugagaUCGCCGCg -3'
miRNA:   3'- aGCGGUGacUGUU--AGUGG----------AGCGGCGa -5'
19299 5' -56 NC_004685.1 + 13734 0.68 0.622881
Target:  5'- -gGaCCGCUGGCAggacggcAUCGCCggGCUGCUg -3'
miRNA:   3'- agC-GGUGACUGU-------UAGUGGagCGGCGA- -5'
19299 5' -56 NC_004685.1 + 16328 0.69 0.527905
Target:  5'- aUCGCCGC-GGC---CACCggCGCCGCg -3'
miRNA:   3'- -AGCGGUGaCUGuuaGUGGa-GCGGCGa -5'
19299 5' -56 NC_004685.1 + 18385 0.7 0.476866
Target:  5'- gUCGCCcCUGACGcgaucaagGUgACCUCGCacaGCg -3'
miRNA:   3'- -AGCGGuGACUGU--------UAgUGGAGCGg--CGa -5'
19299 5' -56 NC_004685.1 + 20863 0.66 0.730868
Target:  5'- -aGCgCGCagGGCAA-CGCCagCGCCGCUg -3'
miRNA:   3'- agCG-GUGa-CUGUUaGUGGa-GCGGCGA- -5'
19299 5' -56 NC_004685.1 + 20999 0.71 0.457137
Target:  5'- cCGuCCGCUGGuguCGAcucucggCACCUUGCCGCUg -3'
miRNA:   3'- aGC-GGUGACU---GUUa------GUGGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 21086 0.69 0.556305
Target:  5'- aUCGCCACgauuGCGGggaaugcaagcgcuUCAUCUgGCCGCUg -3'
miRNA:   3'- -AGCGGUGac--UGUU--------------AGUGGAgCGGCGA- -5'
19299 5' -56 NC_004685.1 + 21200 0.73 0.357265
Target:  5'- gUCGCgGCaGGCGAUCGacuucuCCUCGCCGUc -3'
miRNA:   3'- -AGCGgUGaCUGUUAGU------GGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 22848 0.66 0.70991
Target:  5'- aUCGCCGgUGAauugcaGCCacgCGCCGCa -3'
miRNA:   3'- -AGCGGUgACUguuag-UGGa--GCGGCGa -5'
19299 5' -56 NC_004685.1 + 23062 0.66 0.719383
Target:  5'- cCGCCAUgugaagguaGACGAUCACCUgaaacagggugacCGCCucGCUg -3'
miRNA:   3'- aGCGGUGa--------CUGUUAGUGGA-------------GCGG--CGA- -5'
19299 5' -56 NC_004685.1 + 23818 0.66 0.720432
Target:  5'- cCGUCGCggUGACGAUCACCggcaGCaaCGCg -3'
miRNA:   3'- aGCGGUG--ACUGUUAGUGGag--CG--GCGa -5'
19299 5' -56 NC_004685.1 + 24294 0.67 0.656407
Target:  5'- -gGCCAUUccaucGACGggCACCUCGUgGCg -3'
miRNA:   3'- agCGGUGA-----CUGUuaGUGGAGCGgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.