miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19299 5' -56 NC_004685.1 + 39264 0.68 0.580838
Target:  5'- gCGUCg--GGCAA-CGCCUCGCCGUg -3'
miRNA:   3'- aGCGGugaCUGUUaGUGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 41190 0.7 0.486886
Target:  5'- gUCGaCGCcGACGAUUacaccgugaACCUCGCCGCc -3'
miRNA:   3'- -AGCgGUGaCUGUUAG---------UGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 51320 0.7 0.497006
Target:  5'- gCGaCGCUGAUcGUCACCUCaucgccaccgGCCGCa -3'
miRNA:   3'- aGCgGUGACUGuUAGUGGAG----------CGGCGa -5'
19299 5' -56 NC_004685.1 + 63657 0.7 0.497006
Target:  5'- aUGCCACa-ACAcAUCACCcCGCCGCg -3'
miRNA:   3'- aGCGGUGacUGU-UAGUGGaGCGGCGa -5'
19299 5' -56 NC_004685.1 + 65463 0.7 0.516487
Target:  5'- cUC-CUGCUGACuGUCGucgcacuCCUCGCCGCa -3'
miRNA:   3'- -AGcGGUGACUGuUAGU-------GGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 54048 0.69 0.538365
Target:  5'- aUGCCGCgGGCGAUgG-CUCGCCGUc -3'
miRNA:   3'- aGCGGUGaCUGUUAgUgGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 26730 0.69 0.559489
Target:  5'- -aGCUAgUGACcuaucgcaguAUCACCaUCGCCGCa -3'
miRNA:   3'- agCGGUgACUGu---------UAGUGG-AGCGGCGa -5'
19299 5' -56 NC_004685.1 + 34251 0.68 0.580838
Target:  5'- uUCGCguCgGGCAAcaaCGCgUCGCCGCUg -3'
miRNA:   3'- -AGCGguGaCUGUUa--GUGgAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 41383 0.68 0.580838
Target:  5'- cCGgCACc-GCAucCACCUCGCCGCUc -3'
miRNA:   3'- aGCgGUGacUGUuaGUGGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 4393 0.71 0.457137
Target:  5'- cCGCCAgccUUG-UAGUCGCCggUCGCCGCg -3'
miRNA:   3'- aGCGGU---GACuGUUAGUGG--AGCGGCGa -5'
19299 5' -56 NC_004685.1 + 20999 0.71 0.457137
Target:  5'- cCGuCCGCUGGuguCGAcucucggCACCUUGCCGCUg -3'
miRNA:   3'- aGC-GGUGACU---GUUa------GUGGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 61951 0.71 0.428391
Target:  5'- aCGUC-CUGGCugcggGCCUCGCCGCa -3'
miRNA:   3'- aGCGGuGACUGuuag-UGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 48365 0.76 0.206592
Target:  5'- gUGCgGgUGACGAagcgcaUCGCCUCGCCGCg -3'
miRNA:   3'- aGCGgUgACUGUU------AGUGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 53415 0.76 0.233953
Target:  5'- gUCGCCGCccucuucgaagcccuUGGCGAUgucggcggucggcacUACCUCGCCGCa -3'
miRNA:   3'- -AGCGGUG---------------ACUGUUA---------------GUGGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 59449 0.75 0.253841
Target:  5'- -gGCCAgucgaUGACGGUCAgCUCGCCGUUg -3'
miRNA:   3'- agCGGUg----ACUGUUAGUgGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 50783 0.74 0.287668
Target:  5'- aUGUCcCUGGCuucGUCAcCCUCGCCGCUg -3'
miRNA:   3'- aGCGGuGACUGu--UAGU-GGAGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 65900 0.74 0.302161
Target:  5'- gUGCCGCcgUGACGAUCA--UCGCCGCa -3'
miRNA:   3'- aGCGGUG--ACUGUUAGUggAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 8843 0.73 0.332815
Target:  5'- gUGCgGCaGGCGGUCACCgcgggugacccgUCGCCGCUg -3'
miRNA:   3'- aGCGgUGaCUGUUAGUGG------------AGCGGCGA- -5'
19299 5' -56 NC_004685.1 + 21200 0.73 0.357265
Target:  5'- gUCGCgGCaGGCGAUCGacuucuCCUCGCCGUc -3'
miRNA:   3'- -AGCGgUGaCUGUUAGU------GGAGCGGCGa -5'
19299 5' -56 NC_004685.1 + 36598 0.71 0.419048
Target:  5'- aCGCCGaggacCUGGCGggUGCgCUCGCCGCg -3'
miRNA:   3'- aGCGGU-----GACUGUuaGUG-GAGCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.