Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19300 | 3' | -59.6 | NC_004685.1 | + | 60890 | 0.78 | 0.093495 |
Target: 5'- gGUCGGcgGCGCgUAUCUCGAUGGCCgUGGUg -3' miRNA: 3'- -CAGCC--UGCG-GUAGAGCUACCGG-GCCA- -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 38550 | 0.66 | 0.52566 |
Target: 5'- aUCGG-CGCUAUCUCGuggaucGGCUgGGg -3' miRNA: 3'- cAGCCuGCGGUAGAGCua----CCGGgCCa -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 3174 | 0.66 | 0.546008 |
Target: 5'- uUCGGucagcgcCGCCAUgUCGAUGGUgccgUCGGg -3' miRNA: 3'- cAGCCu------GCGGUAgAGCUACCG----GGCCa -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 52857 | 0.66 | 0.546008 |
Target: 5'- gGUCGGACa-CGUCgUCGAUGGCCUu-- -3' miRNA: 3'- -CAGCCUGcgGUAG-AGCUACCGGGcca -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 41780 | 0.66 | 0.566602 |
Target: 5'- gGUgGGGuCGCCcaccaUCGAggucGGCCCGGUu -3' miRNA: 3'- -CAgCCU-GCGGuag--AGCUa---CCGGGCCA- -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 2439 | 0.66 | 0.566602 |
Target: 5'- -cCGGugGCCugUUCGAcGGCgCGGUc -3' miRNA: 3'- caGCCugCGGuaGAGCUaCCGgGCCA- -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 3964 | 0.66 | 0.572821 |
Target: 5'- cUCGGGCGCgGUCcagaaguccgCGGgcagacgacagccGGCCCGGUg -3' miRNA: 3'- cAGCCUGCGgUAGa---------GCUa------------CCGGGCCA- -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 31233 | 0.66 | 0.576975 |
Target: 5'- --aGGGCGUCggCUCG--GGCCUGGUc -3' miRNA: 3'- cagCCUGCGGuaGAGCuaCCGGGCCA- -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 8556 | 0.66 | 0.576975 |
Target: 5'- uGUCGGgucuGCGCCuGUUUCGGgugccGCCCGGc -3' miRNA: 3'- -CAGCC----UGCGG-UAGAGCUac---CGGGCCa -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 21561 | 0.67 | 0.515593 |
Target: 5'- -cCGGugGUCAUgUCGgcGGCgCUGGg -3' miRNA: 3'- caGCCugCGGUAgAGCuaCCG-GGCCa -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 10174 | 0.67 | 0.515593 |
Target: 5'- cGUUGG-CGUuc-CUCGAUGGCCgGGUc -3' miRNA: 3'- -CAGCCuGCGguaGAGCUACCGGgCCA- -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 21258 | 0.67 | 0.515593 |
Target: 5'- cUCGGccagcaguACGCCAUCgagacCGA-GGCCCuGGUg -3' miRNA: 3'- cAGCC--------UGCGGUAGa----GCUaCCGGG-CCA- -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 66548 | 0.74 | 0.191238 |
Target: 5'- aGUCGGugGCCAagUCGgcGGCCCugcGGa -3' miRNA: 3'- -CAGCCugCGGUagAGCuaCCGGG---CCa -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 2176 | 0.71 | 0.298769 |
Target: 5'- -gCGGGCGCaguGUgUCGAUGGCgCGGa -3' miRNA: 3'- caGCCUGCGg--UAgAGCUACCGgGCCa -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 46200 | 0.69 | 0.359834 |
Target: 5'- uGUCGuGACGCuCGUCUuugUGGUGGCCCu-- -3' miRNA: 3'- -CAGC-CUGCG-GUAGA---GCUACCGGGcca -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 456 | 0.69 | 0.384876 |
Target: 5'- gGUCGG-CGCCAaagaugcgaUCggCGAUGGCUuCGGUg -3' miRNA: 3'- -CAGCCuGCGGU---------AGa-GCUACCGG-GCCA- -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 25417 | 0.68 | 0.411045 |
Target: 5'- -aCGGGCaGUCGUCuUCGAUGGCgUGGc -3' miRNA: 3'- caGCCUG-CGGUAG-AGCUACCGgGCCa -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 44577 | 0.67 | 0.476163 |
Target: 5'- -aCGGugGCCGUCacCGAgaugcaGGgCCGGUa -3' miRNA: 3'- caGCCugCGGUAGa-GCUa-----CCgGGCCA- -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 9530 | 0.67 | 0.485885 |
Target: 5'- aGUCGGGCGgCGgcaagggugCggCGAUGGCCaCGGc -3' miRNA: 3'- -CAGCCUGCgGUa--------Ga-GCUACCGG-GCCa -5' |
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19300 | 3' | -59.6 | NC_004685.1 | + | 33189 | 0.67 | 0.485885 |
Target: 5'- -gUGGGCGCCGgugCGGUGGacgcgcaaCCCGGUc -3' miRNA: 3'- caGCCUGCGGUagaGCUACC--------GGGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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