miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19300 3' -59.6 NC_004685.1 + 7163 0.68 0.451352
Target:  5'- --gGGugGCCAUCgcgguguccgagccgUCGGgaGGCCCGGc -3'
miRNA:   3'- cagCCugCGGUAG---------------AGCUa-CCGGGCCa -5'
19300 3' -59.6 NC_004685.1 + 25417 0.68 0.411045
Target:  5'- -aCGGGCaGUCGUCuUCGAUGGCgUGGc -3'
miRNA:   3'- caGCCUG-CGGUAG-AGCUACCGgGCCa -5'
19300 3' -59.6 NC_004685.1 + 60037 0.69 0.402199
Target:  5'- aUCGGGgguggcguCGCCcuUCggGGUGGCCCGGUu -3'
miRNA:   3'- cAGCCU--------GCGGu-AGagCUACCGGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 25433 0.69 0.402199
Target:  5'- aGUCGGGCGCCAagaUCG--GGCCgGGc -3'
miRNA:   3'- -CAGCCUGCGGUag-AGCuaCCGGgCCa -5'
19300 3' -59.6 NC_004685.1 + 40590 0.69 0.402199
Target:  5'- --aGGuCGCCAUCUUGAUGGUgCCGa- -3'
miRNA:   3'- cagCCuGCGGUAGAGCUACCG-GGCca -5'
19300 3' -59.6 NC_004685.1 + 456 0.69 0.384876
Target:  5'- gGUCGG-CGCCAaagaugcgaUCggCGAUGGCUuCGGUg -3'
miRNA:   3'- -CAGCCuGCGGU---------AGa-GCUACCGG-GCCA- -5'
19300 3' -59.6 NC_004685.1 + 46200 0.69 0.359834
Target:  5'- uGUCGuGACGCuCGUCUuugUGGUGGCCCu-- -3'
miRNA:   3'- -CAGC-CUGCG-GUAGA---GCUACCGGGcca -5'
19300 3' -59.6 NC_004685.1 + 2176 0.71 0.298769
Target:  5'- -gCGGGCGCaguGUgUCGAUGGCgCGGa -3'
miRNA:   3'- caGCCUGCGg--UAgAGCUACCGgGCCa -5'
19300 3' -59.6 NC_004685.1 + 63187 0.72 0.258456
Target:  5'- cUCGGGCggguGCacaAUCUCGAUGGuUCCGGUg -3'
miRNA:   3'- cAGCCUG----CGg--UAGAGCUACC-GGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 38079 0.74 0.196196
Target:  5'- gGUCGGAC-CCGUCcagUCGAUGcCCCGGUu -3'
miRNA:   3'- -CAGCCUGcGGUAG---AGCUACcGGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 66548 0.74 0.191238
Target:  5'- aGUCGGugGCCAagUCGgcGGCCCugcGGa -3'
miRNA:   3'- -CAGCCugCGGUagAGCuaCCGGG---CCa -5'
19300 3' -59.6 NC_004685.1 + 60890 0.78 0.093495
Target:  5'- gGUCGGcgGCGCgUAUCUCGAUGGCCgUGGUg -3'
miRNA:   3'- -CAGCC--UGCG-GUAGAGCUACCGG-GCCA- -5'
19300 3' -59.6 NC_004685.1 + 51239 1.06 0.000907
Target:  5'- uGUCGGACGCCAUCUCGAUGGCCCGGUc -3'
miRNA:   3'- -CAGCCUGCGGUAGAGCUACCGGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.